Array 1 326-1637 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894802.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 326 29 100.0 32 ............................. GGTGACTGGAGCGGAGAAATCAACCGCCACCA 387 29 100.0 33 ............................. ATCACACTGACCGACCGTGAGCAGCACATCGCC 449 29 100.0 32 ............................. CCGTCCGCGCTCACGTGCAGAGCTGCTTCGAT 510 29 100.0 32 ............................. CTGAGGTCGCTGGAGCGATCCGCGAGGGCCAG 571 29 100.0 32 ............................. ATTCATTGTGCATATTCCGTACCATCAATTGG 632 29 100.0 32 ............................. GCGCAACGCATCATCGACGAGTACGAGCAGGA 693 29 100.0 32 ............................. GTCGGATACGTCGTGTACAAGCGTTGGAGTAG 754 29 100.0 32 ............................. TACGAGCTAACCGACGATACCAGGACCTATGC 815 29 100.0 32 ............................. TACTTCGTACTGTGTGCGTAGCTCGTCGAACA 876 29 100.0 32 ............................. GAACGACGGTTGACGTTCTGCATAGGGACGGC 937 29 100.0 32 ............................. TGCGCTGGTGTGTTTTGTGCGCGCCGCGTAGG 998 29 100.0 32 ............................. GTCTGCTCGTCGTCCTTGGCGCTGCGGAGGCA 1059 29 100.0 32 ............................. GAGATCGACGACAGCTTCGGGTTCGACATCCG 1120 29 100.0 32 ............................. ACCCAAGCAAAACCGACGAGCGGATCAGATAA 1181 29 100.0 33 ............................. TACAGCAGGACGAAAAAGCTAAAGGACACTGGC 1243 29 100.0 32 ............................. TAGCCGTCCTGCCCCTCGGCCGTGGACTCGAT 1304 29 100.0 32 ............................. CGCCGATTCGCTCGGCGATCTGTCGCAGAGTC 1365 29 100.0 32 ............................. GCGCGCATCCGCGCCTTCATCCGCAATCACTT 1426 29 100.0 32 ............................. AAAAATGGGTTAACAAACGCAGTCTATATATA 1487 29 100.0 32 ............................. TGATCGTGGACCATCCTCCCCAACACCTCCGG 1548 29 100.0 32 ............................. CTGTTTGTCGGGTGTAAACCGGGTTAACAGGT 1609 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCACCCGCGGGGCTGAACCG # Left flank : TGCCGCGCGCCCACCACAAGCATCTCAAGAGCACCAACATGCTCGAGCGGCTCAACGAGGAGATCCGGCGACGCACGCGCGTGGTGCGCATCTTCCCCAACGCCGCCAGTTGCCTGCGCCTGGTGCGCGCGCTCGCCGCCGAAACCCACGAGGGCTGGCTCGAGGACAACCGCTACCTGAACATGCAGCTACTCAAGGAGCACAAGAAGGACTTGCTCAGGCAAGCCAACGCCGCCTGAGACTCCCCAACCCGACCATGGCCGCTTTTGCACAACTTGACGCACAGAACCCCGGCGCCCTACTACGGCAGCGGGAGTGGTGAGACG # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCACCCGCGGGGCTGAACCGAGATCCTGCCTGGTGTGCCGGAGCAGGATATCGTGTTCCCCGCACCCGCGGGGCTGAACCGGTTTATGATTCCCAGCGCGTGCGAGTGGGGCTGTGTTCCCCGCACCCGCGGGGCTGAACCGGTAAACGTGGTTAACGCATACAGGAGATAGAGGTGTTCCCCGCACCCGCGGGGCTGAACCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1924-3966 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894802.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1924 29 100.0 32 ............................. AGATCCTGCCTGGTGTGCCGGAGCAGGATATC 1985 29 100.0 32 ............................. GTTTATGATTCCCAGCGCGTGCGAGTGGGGCT 2046 29 100.0 32 ............................. GTAAACGTGGTTAACGCATACAGGAGATAGAG 2107 29 100.0 32 ............................. CGCACCGTGCCGTCGACGCCCACGCGATACGT 2168 29 100.0 32 ............................. CAGACCAACCCCCGCACCGGGCGTCCGTACAG 2229 29 100.0 33 ............................. CACGGCGAGGCCGCCGCGGTCACGGTGCTCGCG 2291 29 100.0 32 ............................. ACATGCTGCCCATGTCCGCAATCGCCCGTTAC 2352 29 100.0 32 ............................. CGACCTGACCAATGCCGCACGCCAGCAGCAGC 2413 29 100.0 32 ............................. CGGGCCAGCACGTCCTGGCGCTGTTCGAGAAA 2474 29 100.0 32 ............................. GCGCCGTCGCCGGAATCGTCAAGCTGCACCAG 2535 29 100.0 32 ............................. CGTGCGCAATCGTGAATACCGATATCTGTCGC 2596 29 100.0 32 ............................. CTGTGCTCGTGGCGCCGGCGTCTTAGTCGGGC 2657 29 100.0 32 ............................. TTAACGGCCCCTCACTGAGCTGGCTGAATCGC 2718 29 96.6 32 ............................T GGTGGCCCTGGTGGCCGCTGTGGTGGTGGCTG 2779 29 100.0 32 ............................. AGCCGAAACGGGATCAACGATTTTCTTGTCAC 2840 29 100.0 32 ............................. CCACCGGCGACAAACAGCACCACACCGAATGT 2901 29 100.0 32 ............................. TGGTGTGCGCCGTCCGGGGTTGGCAACGTGAT 2962 29 100.0 32 ............................. CGGATCGGTTTCCACAGGCGTCTCCTGCTCAG 3023 29 100.0 32 ............................. CGGACGTTCGCCTCCGCCCACTCGCTCGGCTT 3084 29 100.0 32 ............................. CCCCAGCGTCAGGGCTACAGCTACCAGCCGAT 3145 29 96.6 32 ............................A GGTCAGGTCGAAACCGGATCATTTGAGGCTGC 3206 29 100.0 32 ............................. CACCGCCGGCGTTTCCTCCAGGGTCCGGGCCT 3267 29 100.0 32 ............................. CCGCGACGGTGCGCTACCGGGAATCGCTCGCC 3328 29 100.0 32 ............................. TCCGCCAGCACCAGCTCGCGGTCAGCGAGGTA 3389 29 100.0 32 ............................. TATCGCAGGGGTGTCCCGTATTTCCAGTGGGA 3450 29 100.0 32 ............................. AGTCCGTGCGACAAACGTTGCGCGAGCTGGGC 3511 29 100.0 32 ............................. GCCTCGTTCAAAGCGGGACAGGTTCCCGCGGT 3572 29 100.0 32 ............................. TCCTCCTGCATCGACTTTGTCCCGTCGACGGC 3633 29 100.0 32 ............................. ATGGCCTGGCGCGTGATGCTGAACAGCCGCCC 3694 29 100.0 32 ............................. GAGACGGCCAGGCGGTCGTGCTGCACGTCCAC 3755 29 100.0 32 ............................. GTCACGAATCCGCTCGCCATGAGCATCCAGCC 3816 29 100.0 32 ............................. TCTATCGCGAACGAAAAACGGCCGCACTCAGG 3877 29 100.0 32 ............................. TGCCGGGCATGAACTGCGCGATGCCGCGGGCG 3938 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGTTCCCCGCACCCGCGGGGCTGAACCG # Left flank : TTGTGTTCCCCGCACCCGCGGGGCTGAACCGAAAAATGGGTTAACAAACGCAGTCTATATATAGTGTTCCCCGCACCCGCGGGGCTGAACCGTGATCGTGGACCATCCTCCCCAACACCTCCGGGTGTTCCCCGCACCCGCGGGGCTGAACCGCTGTTTGTCGGGTGTAAACCGGGTTAACAGGTGTGTTCCCCGCACCCGCGGGGCTGAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGATTGCCAACCCGTCGGCTTTTTTTTACGCTCTAAAACTCGGTGTCGTGGTTAGGGCCGGGCCCCAGCGAGCCACGGCATCCGCCCACCCCGGCCGTGCGGGGTGAGGTCCCATCTACCGATCATTCCCGCCCGGATAAATGAGTATCCCGCGCCTCCGGTGATTGGCGTAGTTCAGGTTGGACGTCGGGATGAACGTTCACGCCCCCAGCATCCCTCCGTGCTCCTGGGCGATGACGAGCATCGCGCGGCCCTTGTCGTCCACGCGGTGTTCCCCACATCCGCGGGGCTGAACCGGCTGGTATGGAGTGACAACCTATCAGGCGGAGGAAGAAGCGCACGTCGAGACGTCCCGGCGTGGTGTGCGCCTTTTCCGGGGAGGCGAGTAATGACCGGGCCACGGCGCCGTCCCACCGTGGCCGCCCTGCGCGTGGGATTGGAGGTCCGGACGGGGACTGCCCGCACAATGAGTAATTTTATTATAAGAAAGGCCTCGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1353-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894824.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00025.25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1352 28 100.0 32 ............................ ACCGATCAACAGGACCCAGAGCCACGGAGAGC 1292 28 100.0 32 ............................ TGTTGGCTCACGCGGTAGCGTCCGCCCTCCGT 1232 28 100.0 32 ............................ AGGACGGGCAAGCCCTATTCGATCCGCGAGCA 1172 28 100.0 32 ............................ CGCAGCTGATTGAACTGCCCGATGTAGTAGGA 1112 28 100.0 32 ............................ AGGTGGCGCTCACGGCCGGGCCGGTGCCCGTC 1052 28 100.0 32 ............................ TCGATGGAGGCCACGCCCTCCGCCATCAAGTC 992 28 100.0 32 ............................ ACCTCCGGCCTGTCCGCGAAGGACACGCAATC 932 28 100.0 32 ............................ GCGCTGACACGCTCGCGTTGTTCAGCGTAGCC 872 28 100.0 32 ............................ ATTTCGACGGATTGGCCGTCGATCACGACCCA 812 28 100.0 32 ............................ GCAGCGTCCAACAGCGTGTTGATGGCCGTCCG 752 28 100.0 32 ............................ ACAAGGACGTCCGCGAGCTCGTCGACGCGACC 692 28 100.0 32 ............................ AAGAAAGCCTTAACCGATTTCGCACGATCGCC 632 28 100.0 32 ............................ TCACGAGCACGGCCCGCGTCACGCGGGTCATC 572 28 100.0 32 ............................ ACCCGCTCCAGATCCATCTCCAGCCGCGGAAC 512 28 100.0 32 ............................ TCGTGGACGTCGTCCTTGCGCCAACGCCGCCC 452 28 100.0 32 ............................ TCTATGGGGTAGTCGATCGAATTGAACTCCGC 392 28 100.0 32 ............................ TGATACGCCTGCATCGTCAGCGACCTGATCTG 332 28 100.0 32 ............................ GTGGCCCGCAAGCCGCAGACGGTGGACACCGT 272 28 100.0 32 ............................ ACAATTGCAGCGGACCCGGAATCAATAAAGTC 212 28 100.0 32 ............................ TGCGGGACGTTGCCGGGCTCAAGATATTTGCC 152 28 100.0 32 ............................ CGGCTGCGCGCCGCCGACGTGCCGCTCGCGAG 92 28 78.6 0 ...G................G..CCGT. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : TCGGCCCGCGCTGGGGACAGGACGGCACGTAGCGAGGATGTCGCACACGGCCCGGGGCCGTGCACGACCTACACGGGTCCGGCCGTAAGCAGGTTGCTCGAAGGCGACCGGGGTTCCTCGGGGAGCGGGCGCGGTTGCCGGTGGACGGAGACCGGAATCGGCCATTCGCGTGGATCGGGCACCGCACACGTGTGCCCCCGCCCTGCCGACAGGCACCCGGCACACGAACGCTGCCCGGGCATGCCGGAGGACACCACCGCCGCTGTCGGTTACCGGGAGCGACAGAGCCGCCGGGCTCACGGCTGCTCAGCGACACGTACGTCTCCGGGGCGCACCCCACAAGGCAACACCGACCCTGATACCGGCGGGACCCTTTTTCCGGGCGCACCATCAAGAGCGCTCAAAATCAACCAATTAACGCCCCACCAGAAAAAAGGGTCCATCCGGTCTCCGGCGCACTTGTCCGTTGACAATCAACCCGTTACCGCCGGATAGTCCTA # Right flank : AGGTCGTGCGCCGAAGGCGTGCGACATCTCAAGCCGAGCCATGCCGGAACGTCGCACACGGCCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42888-41840 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894814.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42887 28 100.0 32 ............................ AGGTCGAACCTGCGGTGAGTGACGACCGGGTC 42827 28 100.0 32 ............................ ATATTCTGCAGCAGATACAGAGCAGGGATCTG 42767 28 100.0 32 ............................ TGCAGGGTGATGGTCGCCATGCCGCCGTCCTG 42707 28 100.0 32 ............................ AGCGACAAACCGACGAGCAATTACTCGCATCT 42647 28 100.0 32 ............................ ACGCTCGACAGCGCCTCGCGGTAGCGCACCGT 42587 28 100.0 32 ............................ AATGAGCGTGGCCACGGCCACCTGGATCTCCG 42527 28 100.0 32 ............................ CAGCCGGTGCCCATTGCCGCGCACTTCGCTAC 42467 28 100.0 32 ............................ TCTTTGATTCCTGAGCCCGCGATATCCTCCCA 42407 28 100.0 32 ............................ GTCGGCGTGCTCCCTCCGGTCACCGAGCGCTA 42347 28 100.0 32 ............................ TGCGCCCGGCGAGCACATACGTCCAGGTCACG 42287 28 100.0 32 ............................ ACGAGCAGCAGGACTTCTCCGCCAGCCGATCC 42227 28 100.0 32 ............................ ACGTCGCCAATCAGCGTCGGTGTGATTCCACC 42167 28 100.0 32 ............................ ATCATCGACTTTGGCACGCATGAGGAACCGAT 42107 28 100.0 32 ............................ ATCGCCGCGCTGCGCAAGGTGGACCTCAAGGC 42047 28 100.0 32 ............................ CCGCTGATCGCGCCGGAGGTGGCGACGGTGGC 41987 28 100.0 32 ............................ TTGAGCTTGTCCCCGAATGTCCGCGCGAAGGC 41927 28 100.0 32 ............................ CGCTGGTCCCCGCTCGGCATGCTCGTGCGCAC 41867 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTGGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : GGTGGGGTGCCGGCGGTCTCCCGGTCGGCGGGCGGGGTCCGGGGCGCGACGTTGCGTGGGCGGTGTTCCGGCGGGAGGACGTCTACGACCTGTCGGCCGTGCACGATCCTGGATGTTGTCCGGGAGGTTTTTGCCAGTTTGCTTGCGGGTTACCGGGAAAACCTGACGACCTGCCGGCCGTTGTTTGCACTGACCTCGTCTGTCAGGCAGTGCCGTGCCTCATTGCCGGCGCTGTGTCGCTCCGCCAAGTGAGCGACATCATCGCGGCTGTCGGTTGCCAAGAGCAACCGACCTACCCGAGCGGCACCCCGTGCCGGGCGTCTTCGGCACCTATAGGCTCAGCCGCACGGTCACCGTGCCGTGGTTTTGACCCTTTTTCCGGCGGCCAGTGGAGCCATCCCGTCAATCAGTGACTTAGCGAAGGGCCTGCAAAAAGGGGCAACGGCTGCCGAATCCCCGTTGTTCTTTAACAAACAGGGGATTACCGCTGATAGACTCTA # Right flank : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGGCTGCCGCGTAGGCAGCTTAGAAAATTGGCTGCGGAGAACCTGGAGGAAAGCTACGGTTGGCTGCCGCGTAGGCAGCTTAGAAATTGAGCCGCTCGAGCTTGCCGAGCTCGGCATTGTTGGCTGCCGCGTAGGCAGCTTAGAAAACCGTCCGCGGCGAGCTATCGCCGGCGCAGGTGTTGGCTGCCGCGTAGGCAGCTTAGAAAGCGGGGCGGTGCCGTCGCCGTCCACGGCCAGCGTTGGCTGCCGCGTAGGCAGCTTAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45272-43619 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894814.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45271 28 96.4 32 .............T.............. GATACGCCTTACGGGCGCCAACGTCAGAGAGC 45211 28 96.4 32 .............T.............. ACCGGCCACGACCGAGGCGCCGGCGCCGCCGG 45151 28 100.0 32 ............................ GGGAGCCCTCAGCCGAGTAGCCAGCGTGCGGT 45091 28 100.0 32 ............................ TGTGGGTGGGAACGCAGCGACCAACGGAGATT 45031 28 100.0 32 ............................ TCGCATCCTACGGTCGCGAGTGTCTGCATCAT 44971 28 100.0 33 ............................ TGCTTGCGAGCGTCCGCGCCACGCCGTGTGTGT 44910 28 100.0 32 ............................ TTGATCTCCGCAACGAGCTCGCGCTGATCGAC 44850 28 100.0 32 ............................ AGATACATCGCCCGGGGCTTTACCGGCGGGGC 44790 28 100.0 32 ............................ AGCGGATGCGGCGCAGTGTCAGTAACGCCCTG 44730 28 100.0 32 ............................ TGCCGGCGCTGCGTATCGAGGTCGAGGGGGCC 44670 28 100.0 33 ............................ AGCGTGAGCGCGCGCGTCCGGCGGCGCGGTCAA 44609 28 100.0 32 ............................ CCCACACAACGTTCTTGGGCACGAAACAGTCC 44549 28 100.0 32 ............................ ACGCCCGCCATACGGCGCGTGCGCAAGCACCG 44489 28 100.0 32 ............................ TCCCACACAACGTTCTTGGGCACGAAACAGTC 44429 28 100.0 33 ............................ CGGCCGATATCCGCCTCGTGCACTTCGATGTAT 44368 28 100.0 32 ............................ AGCGCCCCTCGCAGAAGGACCACGGCTCGCGC 44308 28 100.0 32 ............................ GACCCGAGGACGGTAGCGGCGGCGCCGGCGAG 44248 28 100.0 32 ............................ TGCCCGCCACTCGTAGAGCCGGCCGAGCGCGT 44188 28 100.0 32 ............................ GGCGGCGACAAGCCGGTGAAGGGGCGGGTGGC 44128 28 100.0 32 ............................ TGCGGCTCGTGGACGCGCATGTGCTCGGATAG 44068 28 100.0 32 ............................ AAATCCCACGGATAATTCAGCACTTCCCGCAC 44008 28 100.0 32 ............................ GCCGGGATGATCGTCACCCCGAGGCTGATGCA 43948 28 100.0 32 ............................ TCGGGGCGGTAGTCGTCCCAGCGGTGGCCGTC 43888 28 100.0 33 ............................ GACAGCAGGCACAGACGGGGGGTGACGATGGAC 43827 28 96.4 32 .............T.............. AGCGGCTCCGGCAAGTCCTCGCGTATACGCGA 43767 28 96.4 32 .............T.............. AGGTCGAACCGCCGCCGGGGGTGCAGCAGGCG 43707 28 96.4 33 .............T.............. AGCCGTTGCCGCCGGTGTGCGCTCCATCGGCAT 43646 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : CCGGCTCCATGAGCTGACCGGGCTCCGCTGGCTCACCGGCATGCGCGACCACGTCGATCGCGGCGGGATCCGGGCCGTACCCGACGGGGCCGCCCACCGGGTCGTGCGGCGCCGCCAGTACAAGACCAGCGCCGAGCGGCTGCGGCGCCGGCGCATGCGCCGGCATGACGAGACCTACGAGCAGGCCTGCGCCCAGGTCCCGGACAGCGTCGAGCGGCAGGTGACGACCCCCTTCGTCACCGTCCGCAGCAGCAGTACCGGCCGGGCGTTCAGCCTGTTCATCGAACACGGCGACTGCGGCCCGGACCCCGTGCCCGGTGCCTTCAGCACCTACGGGCTCAGCCGCACGGCCACCGTGCCGTGGTTCTGACCCTTTTTCCGGCGGCCGATAACACGGCTCCATAAATCAGTCACTTAGAAAAGTGCCTGAAAAAAGGGTCAACGGCCGCCGGATCCTCGTTGTTCTTTAATAAACAGATGGTTACCGCGCACAGGCCCTA # Right flank : CCAGGTTCGTCGCACTTTGTCGGGAAAAGATCGCGATTGATGTGCGGCAAGCAGGCACTGTCGCGATCCCAATGGTCGTCAGTTTGGTCATAGCTTGTGATCGCACTGGCGTAAGGTGCGCCGGGTGAGAACCCCAGGCGGCACCTGATGCCCGTGCGGGACGTTGCACGCCTGCGGCGCACAACCTACGCCGGGTCGTTCCTGTAGGTCGGTTGCTCTTGGCAACCGACAGGTGGGGTGCCGGCGGTCTCCCGGTCGGCGGGCGGGGTCCGGGGCGCGACGTTGCGTGGGCGGTGTTCCGGCGGGAGGACGTCTACGACCTGTCGGCCGTGCACGATCCTGGATGTTGTCCGGGAGGTTTTTGCCAGTTTGCTTGCGGGTTACCGGGAAAACCTGACGACCTGCCGGCCGTTGTTTGCACTGACCTCGTCTGTCAGGCAGTGCCGTGCCTCATTGCCGGCGCTGTGTCGCTCCGCCAAGTGAGCGACATCATCGCGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17-838 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894840.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00041.41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 ............................. CACTCACTTGGCGACCCGGACGATAGGGAGGC 78 29 100.0 32 ............................. CTGGTCGCCGGCACCCCCGACGCAGACGACAG 139 29 100.0 32 ............................. CCTGACCCTGTGCGTTCCCGCAAGCTGCGCGA 200 29 100.0 32 ............................. GCCCCAGGGCGTCCACCACCAGACGCGCCAGA 261 29 100.0 32 ............................. CCCGCGCGTGTAGTAACCACGTTGCGTGACCA 322 29 100.0 32 ............................. GCTCGGGCACAGGCCCGAATGCTCCGGCGCAT 383 29 100.0 32 ............................. CCGATACTCATGAGCGGACCGATAGTGCGGGC 444 29 100.0 32 ............................. TCCTCCTCTAGTCGCTGGTGGTTCCTCACAGA 505 29 100.0 32 ............................. GTGGCCGCGCCCTCGGCCTCGCCGCCGGAGAG 566 29 100.0 32 ............................. TCTTTGCTCATCTCGTCGTCCTCCCTTACTGT 627 29 100.0 32 ............................. TTCAGCGAGCACGCCGAGACCCTGGGCGACAA 688 29 100.0 32 ............................. GGCTAGGTACAACATCGACCAAAACAGCCATG 749 29 100.0 32 ............................. CCGTCGCAGGATCGCTCGCGGGCCGTCTCGTC 810 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCACCCGCGGGGCTGAACCG # Left flank : ACGAGGTGTGGTCGTTG # Right flank : GGTTCGACAATGCGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2463-3345 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894840.1 Arhodomonas aquaeolei DSM 8974 C516DRAFT_scaffold00041.41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2463 29 100.0 32 ............................. ACGTGATCGCGCTCGGCCTTCATTTCGGCGGC 2524 29 100.0 32 ............................. TGCGGAGTGATGAGGTCCGTCGGAAGGAGGGG 2585 29 100.0 32 ............................. CTACAGCCTGCCCCCCACGCGAAATGCCAAAA 2646 29 100.0 32 ............................. CCCAGCCGCCGGCCGGTGACGCAGTGGCGTGG 2707 29 100.0 32 ............................. CCCGGGTCACGTGCTCGCGCGCTGGTTCGACT 2768 29 100.0 32 ............................. TTGTACCGCGCCTACCGCTTTCTTTCATCGCC 2829 29 100.0 32 ............................. GGACCGGAACCGCGGGGCGTGCGGAACAACAA 2890 29 100.0 32 ............................. CCCGCCTTATAGGCGAAGTAGGCCGCGGCGGC 2951 29 100.0 32 ............................. GGTGCGCGAGCCCCGGGGCGAGCTCCCGGCCG 3012 29 100.0 32 ............................. CTCACGCTGGTCACCGGCACCCCGGGCGCGGG 3073 29 100.0 32 ............................. TGGCACGTCCTGCGGCTTCGTCGCACGGCGCG 3134 29 100.0 32 ............................. CGGAGGACGTGGTCGCCGTCGTCCGCGCGGCG 3195 29 100.0 32 ............................. TAGTAGGGGCCACCGTCGAGGTCTCGGCCGAA 3256 29 100.0 32 ............................. TGTTAACAGTTTATCCATTGCAGGGGCAGCAG 3317 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 33 GTGTTCCCCGCACCCGCGGGGCTGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTTGATATC # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //