Array 1 104144-103781 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHJM010000004.1 Streptococcus pyogenes strain NS2299, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
    104143	    31	  93.5	    37	............GC.................	TAGACGATGATCTGCCGTTTTAAATGATATGGCTAAC	
    104075	    31	  93.5	    35	............GC.................	TTCTTCTACTGCTTGAGTGGTATTAACTTCTGCTA  	
    104009	    31	 100.0	    35	...............................	TGATATAGTATGTCCCAATCTCCAAAATCTTATTA  	
    103943	    31	 100.0	    35	...............................	TATTTAGTCGCCAACTTTAACTACGATCAAACTTG  	
    103877	    31	  96.8	    35	...........................A...	TATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA  	
    103811	    31	 100.0	     0	...............................	|                                    	
==========	======	======	======	===============================	=====================================	==================
         6	    31	  97.3	    36	GTCTCACCCTTCATGGGTGAGTGGATTGAAA	                                     	       

# Left flank :   AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGTGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT
# Right flank :  GATGAACCTGACCTCATTAAAAGAGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTGTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC

# Questionable array : NO	 Score: 9.12
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAA
# Alternate repeat :   GTCTCACCCTTCGCGGGTGAGTGGATTGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.61%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.70,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [1-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : NA
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