Array 1 115589-116375 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================== ================== 115589 30 100.0 36 .............................. CAAGCTATTATTTTCAAGCTGCATCCTGCTACTTAT 115655 30 100.0 37 .............................. TGGTAGCCGAGAATACGATTTTTACAGATATACAAAG 115722 30 100.0 36 .............................. TCAGTTTCTATTTCTGTTCCACCCTTTAGGTCAAGT 115788 30 96.7 19 .............................T GGGATAACAATATAATATA Deletion [115837] 115837 30 76.7 36 T..TC..T.........TAC.......... TAACGATTTGTATTTATTTTATTGTTACTTACATCA 115903 30 96.7 35 .................T............ GCCAATGCAGAAAGTGAACCTCTGTGCAATATAGC 115968 30 90.0 91 ...T............TT............ TCAGCTAAACCTACTATCTTTGGCTAAAATATAGAGATTAAACCTTAACAATAAAAAAGAAGCTTCTATAGAGCCTCTTGAAGCTTACAGT 116089 30 80.0 31 .A.T.....A......TT...........G GAGATGTTTTAGAATATGATACAATAACAGA 116150 30 86.7 27 .A.T............G............T TAGCAACTACACAAAGATATATAAGAA T [116152] Deletion [116208] 116208 30 90.0 42 ...............C.T...........T AGGGGTGGAGGGCCGTTTCTTGAGTTCACCAAACCGAAACAT 116280 30 96.7 36 ..C........................... AACCATTTATCTCTATATCCTGTCATTATTTTATTA 116346 30 90.0 0 ................TT...........A | ========== ====== ====== ====== ============================== =========================================================================================== ================== 12 30 92.0 39 ATTAAACCTTAACACTACGTGTATTTAAAC # Left flank : TTTTAATGACGAATTAGATATCGACATTGTTAAATTGCAGTTGGAAGCTATAAAAGAAGAAATACAAGAATCTGTTTTAAGAGGAAATTTTGACATTAAAGATTACACAAAATTTTATATAAATGAATTAAAATTTACCGAAGTTGTTAGCATAGAAATAAAGGAAGAATTTCAAAACTTTATTGATTCTTGTACAAAGCAATATATGCCAGTTATTTTTGATTAAACCTTAATACTTTGTGTATTTAAACTAACGACTTGTATCTATTTTATTGTTACTTACATCAATTAAACCTTAACACTATATTTTTATTGTTTATATAAAATATTGCAAGTTAATTTATATAATGATATAATTAATTTATCCCAAGTTAATTGATATAGACTTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAACTTAAAACAATTGAAATTGCTGTCTTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCT # Right flank : AGTTAGGATAATATTATGTTTTATATAAATACTATAATATATATAGTATTTATTAGTTATATTAGATTTCTGTACATAACTCTTAGTGGAGAAGACTTCTGGAATTTTGCCATTTTGGTATATGTACTTTATAAAACTGTAAAACACTGCTTAAGATAGCAGTGTTTTTTTATTTCAACAATATAATTTATAATATTTTATAATAATTATATTTTTATTGTTTATATAAAATATTGTAATTTAATTTATATAATGTTATAATTAATTTATCCCAAGTTAATTGATGTATTATTTGGAACATCTGCATTCTTATTTTTAGCTATTAGTTGGGATAAAAAACTTAAAACAATTAAAATTGCTGTATTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCTATTAAACCTTAACACTACGTGTATTTAAACTTTGTGTCGTCCCACATGGAGCCCCTAACCTCGAACATTAAACCTTAACACTACGTGTATTTAAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 125174-125334 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 125174 30 100.0 35 .............................. AACTTTACAGTTGGATGGCAAGAAAGTGGAAATAA 125239 30 100.0 36 .............................. TCTGTAAAAGAGTGTTTTAAACTACTCTTGCCAAGT 125305 30 86.7 0 .......................AAA...G | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 95.6 36 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : TATTTCTGGAGTTTGCTCTTTTACAAATTGTAGAGCCAACCCATTTTGTTTTACTGCAATAAGGGATAAATTGTAAAGCTGTTCTTTAGTTAAATTAAGTTCATCGAATTTAACATGTCCAAGTAACATTCCATCTCTTTTTAATGCTTCTATACACATCTCGTAAGTTTGTGTTTTTGCAAATCTCAAATCCCATGGCCATCTTTTTATACAATCTAAATCTATTCCCCTCACTTAGTCATCTCCTTTTCAACATTATTTTTATAACACTATATTTTATACAATATATTAAATTACGTTATTATTTATAATAATCATATCATTTTTATTGATTATATAAAATATTGTAAGTTGATTTATATAGTGGTATAATTAATTTATCTCAAGTTAATTGACATAGTATCTATTTTCTTATTGTTAGTTGAAATAAAAAACTTAGATTAATTGAAGTTACTGTATTATAAGCATTTCTTAATTTTAGAAATGGCTTATTTACAGCT # Right flank : GAAGTTACCTATAACTTAGATAACTTCTTTTTATTTATATTATTTATTATAAATATCTACGTAGACTCCCATACTTCCATTTTTAATTTCTACTTTTTTCCCGTCCATTTCTAAAGTTTGGTCTTCGAATTTTCCTTTTACAATATTAAAAAGTTGTTCCCCTTTTGTTGGTAGGAGTAGTTTAAAACACTCCTTCACAGAACTATCAAACTCTGGGGAATTTGAAAATAAACCAAATCCAACTACATTATCTTCTGCATTTACTATACCCATTTCATTGAATCCATTCCCTTGATTTGATTTCTGCTTATATACATATGTTGTGCTTCCATCTTTTGTCCAGCCAAGTTCAGGCAACTTCTCTCTAAACTCTGCATTTGTAATAGTTCCAGGAGTCTCTTCTCCCTTTAATATATTTAAAATTTCTCTAAAAACATTTTCATTTCCGCCATTGCCGACTTGTGTAACTTTACTAAATTCATGTTTTTTTATAAAATTTT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 127199-127492 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 127199 32 100.0 32 ................................ GAACATCCAAAGCCTGTTGCTGTGCCACTTGG 127263 32 100.0 35 ................................ CGTCCATCCAAGTTCTGGTAGCTTATTTCTAAATT 127330 32 96.9 34 ..............................C. AAACAAACAAATTAGATAGTCCGATTAAACTTTT 127396 32 100.0 34 ................................ TTGCCAGCTTTCTCCTTTATCTACTCCATAAAGA 127462 31 84.4 0 .................C.....-AA...G.. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.3 34 ATTAAACCTTAACACTATGTGTATTTAAACAA # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCTCCTCTATTTATATTAAACATTATATAATACATGCTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTATAAAAAAAACTAATCTATTTTCTTATTTTAATAATAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACCTCTCTTTACCAAAAGTTGCCTTTTTATATAATACTAACTTTAATTATATAATATGTATTTTTTTCTAAATTGTCAATATTTTTAATAAATTTTATTGATTATATAAAATATTGCAAGTTGATTTTTTTAGTGATATAATTAAATTATCCCAAGCTAATTGATGTAGATATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATACAAAAATTAGATTAACTGAAATTGCTGTGTTACAAGCATTTATTGATTTTAGGAATGGCTTGTTTACAGCT # Right flank : AGTTACCTATAACTTAGGTAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAGACTCCTATGCTTCCATTTTTGATTTCTACTTTCTTGCCATCCATTTCTAATGTTTGATCTTCGAATTTATCCTTTACAATATTAAAAAGTTCTTCTCCTTTTGTTGGTAGAAGTAGTTTAAAGCACTCCTTCACAGAACTATCAAACTCTGTGGAATTTGAAAATAAACCAAATCCAACTACATTATCTTCTGCATTTACTATACCCATTTCATTGAATCCATTCCCTTGATTTGATTTCTGCTTATATACATATGTTGTGCTTCCATCTTTTGTCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTACTAACACTCAAATCAGCATCATTCTTATCTTCTTTTTTATCCTGGTCCTTAACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACTAATATTTCTTTT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 128634-128936 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 128634 31 100.0 43 ............................... AATATGTATATATGCATAACCTAATAACCTAATATTTAAACTA 128708 31 100.0 35 ............................... GAAGTTTAGTTTTTAGTTCTTCATATTTTAAAAAG 128774 31 100.0 35 ............................... CTTTAATATAGAAGCTGTAATAGGAAAAACAGCCC 128840 31 96.8 36 C.............................. TATTCTTTCATACTCAAATTTAAAGGAAGGTTTATT 128907 30 87.1 0 G.......................-A....G | ========== ====== ====== ====== =============================== =========================================== ================== 5 31 96.8 38 TATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CATAAAATGTAAATAAATTATCGTTTAAATTTAATGAATACCCTGAACCATATTTTTCACTTTCTACTTTAGTACCTTTTTGGCCCAATTTATCTGCCAAATCGAAAATTTTAATTTCTTTATCAGCTGTAGTTTTTAAAGTTATTTCTTCTGCATTTATTGTTAAGCATTGACCTAATACACAACCCATAATTAGACCAGCTATAGTTATTTTTTTTATATTTTTATTCAATTTAAAACACCTCATTTTTATCTATTTAATATCATTGTATGTATTTTTTTATAAATTGTCAATAAATTTTGATATTTTTGTTGTTTATATTAAATATTGTAAATTTATTTATATAGTGATATAATTAATTTATCCCAAGTTAATTATTACAGTATTTGAAATATCTACATTCTTATCTTTAATTATTAGCTGGTATAAAAAACTTAGATTAACTGAAATTGCTGTATTTCAAGTATTTCTTAATTTTGAGAGGTGGCTTGTTTACAGC # Right flank : GAAGAGCTATCTAAATTAATAGATAGCTCTTTTTTTTATATTTAAAACTCTTTTAAGAAATTAAGATATCTTCCCCTATGAACATTAACACCTTTCTCTAAATCAAATCCTCCATTTTCATTATAGATTCTATTTATAAACTTTTCTTTAGTGATGTTTTCTTGGCAACCTATAGTAAATAGCCATTCTCCATCCTCTTTTATGGCTAATACTTCTCTGGCTTTTCCTTGCTTTTCTAAATATTTAACACCAAACTCTTCTAAATACTTTTCTTTGTCTTTAATATATCTAATTGCATATACATTCTGTTTTAGAGCTTTTCTACATATTTCATCTGTCTGATTCTTTAAGAATTTGCCTTCTAATTCGCTCCACTTTACATACTCAAGTGCTAAGCCATCCTCTTTTACTGCTTCAAGACAAATCTTTTTGGTTTGTTTCTTTACATATTCTAAAGCTAAACCATTTTCTTTTACTGCCTCAAGACATGTCTTTTCTGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 133975-134465 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 133975 31 100.0 34 ............................... TGGGAGATTCTCCAGAGTTTTCCGCATCAGTGAA 134040 31 100.0 35 ............................... AAGTGTCTATTAACATTTGCAACAGTGTCTTCTAC 134106 31 100.0 35 ............................... GTTATATTTTTGTTGCTTCCCTTCTTAACATGGTC 134172 31 100.0 36 ............................... CCATATCTATCTTTCAAAAACTCATATGCATATTTA 134239 31 100.0 35 ............................... TAATTAAAATATTTACAAATAGAATTATAAGAAAG 134305 31 100.0 34 ............................... TGATAAAACACTACATACAAACTCAACCTCGCTC 134370 31 100.0 34 ............................... TGTTATATAAATACATATTACACAAGATATGTAT 134435 31 90.3 0 ................T............CA | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 98.8 35 ATTAAACCTTAACACTATGTGTATTTAAATT # Left flank : TTTTAATTTACCGTCATTATCCCATCTTTGCAGTGTAATAACTGATACATTTAATAATTCTGCAAACTCTTTAGGTTTATAATGTTTGCTCATATAATCACAAAAGGATGTGATTATATTAGACTATATTTGATTATATTTTTATCAACTAAAGAGTATCTCCTTATGTTTAATTTATTTTCTATAAAACTATATTTTCACATTATAAATATAGTAAATTTTTCTATTTTTTATAATTTTATTTTCATGACACTATATTTTAATTTATTATACTTTTCTCAATTATTTTTTATAATAATTGTATCATTTTTATTGTTTATATAAAATATTGCAAGTTGATTTATATGGTGATATAATTAAATTATCCCAAGCTAATTGATGTAGATATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAAATTAATTGATACTACTGTATTACAAGTATTTATTGATTTTAAAAATGGCTTGTTTACATCT # Right flank : ACCACTCTTTGGACCATCTTTAAGTGTAAAAAAAGAGCTGTCTATCAGTTTAGACAGCTCTTTTTATTTAATAAAAATCCTTCAAAAATTCAAGATATATTTCTCTGTGAACGTTAATATCTTCCTCTGGATCAAATCCGCCATTTTCTGTATAAATTCTATCCATAAATTCTTCAAGATTTATATATTCCTGGCAACCTACTGTAAATAGCCACTCTCCATCCTCTTTTATGGCTATTACTTCTTGAGCACCTTTTTGTTCTTCTAAATATTTAATATCAAATTCTTCTACATATTTTCCCTTATCTTTTATATAATCAATTAAACGTTTATCCTGTTTTAGAACTTTTCTACACATTTCATCTGTTTGTTCTTTTACATACATAATTGCATATTTATCTTGTTTTAAAGCTTCTATACATATTTCTGGCACCTGTTTTTTTACATATCTTAAAGCAAATCCATCTTCTCTTACTGCGGTTAAACATATTTCTTCAGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 6 144452-144877 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 144452 30 100.0 37 .............................. TTGTTGGCAAAATTAACTTTAAACATTCTTTCACTGA 144519 30 100.0 37 .............................. ATCGCCCCTTGCACATTCGTAGCAGTAAGCTTGCTTG 144586 30 100.0 37 .............................. TCGGGTAAATCTTTTTCTTTAGCTCAAAGAACAGTAT 144653 30 100.0 35 .............................. TGCTATCTATTAGTTTTTTAAAACTGTTCTCTCTG 144718 30 96.7 35 .................C............ CATGCTCCACCGCCTACAACATAAAGATTTTGCGT 144783 30 96.7 35 .................C............ TTTCTTTGTTGATTATAACTATTTTACTATAAAAA 144848 30 90.0 0 ................TT........A... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 ATTAAACCTTAACACTAAGTGTATTTGAAC # Left flank : AATAAATTCTAAATTTTTTTCAAGAATCTAAAATATATTTCTCTATAAATGTTTATTTACAACTTTAAATTAGATTCTTATAATTTAATTGCTGTAAGATATAAATTATATAACTGCTCTTTAGTTAAGTTAAGCTCACCCCATCTTACATCTTTAAGCAACACTCTTGTCGCTTTACTACTTCTATGCACATCTCATAATTTTGTTTTTTTCATTTCTTAATTCCCAGGGATTTCTTTTTATCCCATTTAAACTTATTCCATATATATCCCTCTTTTCAATATTATTTTTATAAAATTTACATCATTTTTATTGTTTATATTAAATATTGTAAATTTATTTATATAGTGATATAATCAAATTATCCCAAGTTAATTTATATAGACTTTGAAATATCTATATTCTTATTTTTAATTGTTAGTTGGGATAAAAGACTTAAATTAATTGAAATTACTATATTTCAAGTATTTATTAATTTTAGGAATGGCTTGTTTACAGCT # Right flank : CAACGCCAATAAAAGTGGTTCAAAAAAAAGCTATCTAAATTAACAGATAGCTCTTTTTAAATTATTGAAATCCTTTTAAAAATTTAAGATATATTTTCCTATAGACATTTCTACCTAATCTCAGGTCAACCCTTCACCTTCATTATAAATTCTTCTTTAGTAATACCTCTTTCAAAAATAAATAATCTAAAATCTTACATATTGAAGAGCAAATCTATTTTGATTAACTGCAATAATGCGCAAGTTATATATCTGCTCTTTAGTTAAGTTAGGCTCATTAAACTCCACGCACATCTCATAGGTTTATTTCTTTACTTGCATTAATTCCCATGGGAATTTTTTTATTTTATCTAAGCCTATTTCCTTCATCTATCTTTCCCCTCTTTAATTTTATTTTTATAACACTTTTATTATAGTATTTTTAATTATTTTTATATTAAGATATTTTATTTTCTTAGGTTTGTGGTATAATGAAAGCAAGAAGAACTACAATCTATTTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTAAGTGTATTTGAAC # Alternate repeat : ATTAAACCTTAACACTACGTGTATTTGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 148068-148295 **** Predicted by CRISPRDetect 2.4 *** >NC_017177.1 Clostridioides difficile BI1 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 148068 30 100.0 36 .............................. CTTTTTAGAAGAATACACACTTTTTTAATATTTCAT 148134 30 100.0 36 .............................. CATGCTAAGAAGCGTTTATTAACCAGTCTTGATAAT 148200 30 93.3 36 .................TG........... CTAAAATATTAATTTCTTTATTTAAAGGATTTTGAG 148266 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 ATTAAACCTTAACACTACATGTATTTAAAT # Left flank : ACGTACTCTAAAGCCAATCCATTTTGCCTTACTGCTATTGAATATATATGATAAATTTCTCCTCTTGAAAATTTTTGTTTTAATTTTTCATATTTTATATATTCTAAAGCTAATCCATTTTTTCTTACTGCTTCTATATATAGACTCTTAAGTTGTTTTTTGGTTAAGTCAATATCATCCAAATTTAAGTGAGATAAACATCTCCAATATCGCTGAATCTCTTTAAAATAAAATACATAGTTTTTATTATCTATATTTTTTATAATATCCCCACCTTTTTTATTTTTATATAATATATTATATCATTTATGTTGTTTATATAAAATATTGTAAGTTAATTTATTTAGTGGTATAATTAGTTTATCCCAATCTAATTGATGTATATGTTGAAACACCTACATTATTATTTTTGACTTTCGGTTGGGATAAAAAACTTAAAATAATTGAAATTGCAATATTGTAATCATTTTTTAATTTTGAGAAATGACTTGTTTACAGTC # Right flank : TAATAATAATAATATGTAATTTGAAACATAGGCAAACGTAGTTGGGGATATCTAAATTAAAAGATATCCCCAACAAATCAAATCTATCATCTTTATTTTTTATATACTTAATTATTAGTTATTAACTCATATTACTTATGTGTGAATTCATCGATTATCATTTCAACTTCTGCCCTTAATACTGCTAAATTAATTCCCCTTTAACAATTCCATTCATATTTACACCTCTTCAAATCTATATTTTTGAATAACATTAGGATATTTTTCTTTATCTACTTTAAATAAAAACATTTCAATAGGTCTTACGATGATAAAAGTTGCCTTTATCATCTTTATATATAATCATATCCTCATTTGTTTCTGTATGACAAGAAGAAAATCTATAATCAAATATATCTAATCTATCCCAACAACCTAAACTTTCAAAAACATTGTAAAGTTCATTGTCGGCAACAGGTATGCTAATTCCCATAACTATATAAAATTATTGTTTTAATTTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1304505-1305458 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1304505 29 100.0 37 ............................. TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG 1304571 29 100.0 38 ............................. CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC 1304638 29 100.0 35 ............................. AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG 1304702 29 100.0 39 ............................. TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA 1304770 29 100.0 37 ............................. TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG 1304836 29 100.0 39 ............................. AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA 1304904 29 100.0 34 ............................. GGGTCTGACTTTAATATATATATATATATAAATT 1304967 29 100.0 37 ............................. TTATAAACTCCCACGACAAAATTAACTATAACCTCGT 1305033 29 100.0 37 ............................. AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA 1305099 29 100.0 37 ............................. GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG 1305165 29 100.0 37 ............................. ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG 1305231 29 100.0 38 ............................. TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG 1305298 29 100.0 37 ............................. TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC 1305364 29 100.0 37 ............................. CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA 1305430 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAAATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCCTAACAGTTGAAATATAAGGCATTGAGGGTATGTGATAAATGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACACATATAATACAATCAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAACATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTGATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1513844-1514596 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1513844 29 93.1 37 ........................G...G AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA 1513910 29 100.0 34 ............................. AAGGAAGGTGGAAGTCAATATGCATGGGTCAAAT 1513975 29 100.0 36 ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATA 1514040 29 100.0 38 ............................. TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA 1514107 29 100.0 38 ............................. TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA 1514174 29 100.0 38 ............................. AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT 1514241 29 100.0 37 ............................. GAATTATATATTATGAAAAAATATGGAGTCACAGAGG 1514307 29 100.0 36 ............................. TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG 1514372 29 100.0 34 ............................. TACTTTAGCACTAGTAAAGGTAGAATTATTAAAG 1514436 29 100.0 37 ............................. TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG 1514502 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 1514568 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 96.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAATGCTTGAAATATAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGGGTAAA # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTATTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGATCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATCTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1625214-1625507 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1625214 29 100.0 36 ............................. CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT 1625279 29 100.0 37 ............................. TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG 1625345 29 100.0 38 ............................. ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC 1625412 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 1625479 29 89.7 0 ........C........C.....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.9 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCTATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1717891-1718247 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1717891 29 100.0 36 ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1717956 29 100.0 37 ............................. TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC 1718022 29 100.0 37 ............................. AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG 1718088 29 100.0 36 ............................. GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC 1718153 29 100.0 37 ............................. TATTTTACAGATGAACAATTACAGTTACTTCTTGAAT 1718219 29 82.8 0 ......T.........G....T.CA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 97.1 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATAGGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAATAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTGATAAATTGAAGTTTAACAGTTGCAATATAAGGCGTTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTCAACTTATTTTGGG # Right flank : TTAAATAGAAAAAAGAAAGCACTTACTTAAATAGTAGGTGCTTTTGTTTTGCTCAAATTACTTAATTATAAAGTTGCTAAGTACAACTTTTTAGAATTATACAATATAAAAATGCACTAAAGTGATTGATTTTGCTCAAGTTGGTCGGTTGAGTAAAATAATTAGAAAAAAATGTTAAAAAACTCTTGAAAAGTGTCGCGATACAATGTATAATTATATTATCGCGATACAGAAAAGAGGTGAAAATTATTACTGATAGCAGTAGAGCAGATTACTTCAAGCAGAGACGACAGAATAAAAAAACTTTTAGTGTTCTACTAGATAGAGAGAAAGTAGAGAAAATTGAAGAACATTTAAAAAAGCAGAACAAGACTAAAACTATTTGGCTTGAAGAAAAGATTAATGAAGAGCTAGAAAAAGAGGAATAAAAAATAAGAGACGTTCTCCCCGACCAAAGATTGAACATCCCTTATTGACGTATATTATATACACTAACTATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1720112-1720401 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1720112 29 100.0 37 ............................. CTTTGTAATGGTAGTGTATTTAAGATTGAAACATCAA 1720178 29 100.0 36 ............................. CAACATTAGTAGTTGTCTTTATACACATAGCATCAC 1720243 29 100.0 38 ............................. ACAGCTCCCAAGACATACAACGAATCTGTAACATCAGT 1720310 29 89.7 34 ................G...T.......A GACTTATTTACAGCTTTATTTGCTAAATCAGAAG 1720373 29 86.2 0 ................G....C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.2 36 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : ATTGCAGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTTGGGGGGATTAATACAATGCATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTCTTAGAAAAAATTAGAGAAAAATAATTAAATAAATAGATAAAGCACTTGGATATTTCACTGTTTCAAGTGCTTTATATGGTAAAAAATGGTATAATAAAATATAGGAATTTTGCAGTGTTCGATTTTTCTACTCAAGTATAGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTATTACCCGCTCACTGCAAATTTGAGAAAGTTATATGTGTGTAAGTCTTGGAAATACACAATTTATTTTGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTAATGTAGGTGTTTTTTTATTGAAAGGAAGTGATTATAATGTAAAAATTTTGAAGATATAGTATAATATTCTTATAAAATATAATTTAGGGGGATATTATGAGAGAAGGAAAGAGAAGAAGAGGATGTCTATTTTGGTTTATTCTTATTATTTTATTTTCTGGAGTTGTTGGAGCAATAGCAGGGAACAGTACTAATAATGAAAGCACTGAAAAACAGAAAGAGGATTTAACTAAATATATTGGTGAAGAAGGTAGTATAGGAGATTTAAAATTAACTGTTAATAGCATTTCAAAAGCTAGTGAAATATCAGTAGCATCTGGTTATTTAGCATACACTCCAGATAGTGGCAAATATGGTATTATAAATTTAACAATAAAAAATCAAACTAAGGAAAGCCAATCTTTTATGCTAAATTCATTCACATTAATAGGACCAGATGATTCAAAATATGTTCCATCTTTATTGATTGATGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 1857676-1858891 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1857676 29 100.0 37 ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 1857742 29 100.0 37 ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 1857808 29 100.0 38 ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 1857875 29 100.0 37 ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 1857941 29 100.0 37 ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 1858007 29 100.0 37 ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 1858073 29 100.0 37 ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 1858139 29 100.0 38 ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 1858206 29 100.0 36 ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 1858271 29 100.0 37 ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 1858337 29 100.0 37 ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 1858403 29 100.0 36 ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 1858468 29 100.0 37 ............................. ATAATCTTGTTATAGACTTTACTATTGTTGTAATAGA 1858534 29 100.0 35 ............................. CTTACCAGACCCTGCAACACTAAATGACTTACATA 1858598 29 100.0 37 ............................. TCATCAGTATTTGTAAAATGCTTTAACTTATCATAAT 1858664 29 100.0 39 ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 1858732 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 1858798 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 1858863 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 98.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 2208881-2208255 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2208880 29 100.0 36 ............................. TAGGATTGGTGTGTTACGACCACACAACGCTGGACT 2208815 29 100.0 39 ............................. AGTGAATTTGGCGAACTCGATATAGAGAAAAAAATAAAG 2208747 29 100.0 37 ............................. GAAGTTTTTAATGTTGTCGCGACTCTTGCTGTTGCTT 2208681 29 100.0 38 ............................. CTGCTTTGGCTTTTGGTCGTATAATGCTCCTTATAATA 2208614 29 100.0 37 ............................. TTAAATCTAGCATCAGTCATTAGTATAAAATTTCCTC 2208548 29 100.0 38 ............................. AATAAAAAAGGTATAGTTTTCTTCTTAGTTACTGCCAT 2208481 29 100.0 37 ............................. TGTTATAATATTAAAACACAACTAAAATATACAGAAA 2208415 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 2208350 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 2208283 29 89.7 0 ............T......T...A..... | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGAATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 3254062-3252448 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3254061 29 100.0 36 ............................. TTAAAGGTGCAAGTCTTAATACTTGTTACATGAGTT 3253996 29 100.0 37 ............................. AACAAAGAACCATTTGAATCACGAAAACTAAAAAACA 3253930 29 100.0 38 ............................. TTATTAACCTTATCAGAAACCTGACCATCCCAATTATA 3253863 29 100.0 36 ............................. TCCATTTGTCTAATGCTTCTAACTCTTTTTTTATAC 3253798 29 100.0 38 ............................. TCCAAAATGGGCTTGGAGTTAAGAGTTGTATAAGAAAC 3253731 29 100.0 38 ............................. TAATTACACACTCCCTTTTAACGAACATATTTTAGATT 3253664 29 100.0 41 ............................. AGACTCGACATAGAATCGGTTACTAAATCCGAGGGTTTCAG 3253594 29 100.0 37 ............................. ACTAAACCTTTTTGTTTACTTTTATTTCTCATTTTAC 3253528 29 100.0 37 ............................. CCGGATTTTTCTGCTTCGACTGTTGTTATTGAGACTT 3253462 29 100.0 38 ............................. AGTAATTCCATGCAATCTTTTATATTGCTTTTTAACCT 3253395 29 100.0 36 ............................. AGATATACAAGGTGAAAGTGTTGAAATTTCAATCTT 3253330 29 100.0 36 ............................. ATTCTTAGATGTTATAATTTGTGTTGCATTTAAATC 3253265 29 100.0 37 ............................. ACAATATTATTGTTCATTTCATTTAATAATTCTAGTA 3253199 29 100.0 37 ............................. TTGTTTATACCTTTAATCTTTAAAATTAAATATAAAA 3253133 29 100.0 37 ............................. CATTGTATACTAAGCTTGATATAGTGCAAAATGAAAC 3253067 29 100.0 36 ............................. ACTAATTGGGTTAAACAAATGGATATAACTAAATTA 3253002 29 100.0 37 ............................. CCAACCCTTCGCACGAATCCGTGCGACGAAATATAAA 3252936 29 100.0 37 ............................. TGTAAAAATATTGCTTAGCATATTGATATCACTAACT 3252870 29 100.0 37 ............................. ACAAGAGGTTTTTCAGCAATATATGTACTTCTATAAT 3252804 29 100.0 38 ............................. TCATCAATATTAATTTTGGGAATATCAACATTTTTTGC 3252737 29 100.0 37 ............................. GCGATAAGAGATTCGAGTCTTTTTACTGGGCTTAATC 3252671 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 3252605 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 3252540 29 75.9 35 A...........TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 3252476 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ========================================= ================== 25 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAGAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 3500071-3499448 **** Predicted by CRISPRDetect 2.4 *** >NC_017179.1 Clostridioides difficile BI1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3500070 29 100.0 39 ............................. ATTCCGGAAAGTACTTTTGCTATTTGATTCATTCTACCC 3500002 29 100.0 37 ............................. TTCACTAATTTTAGTTACAACTATTACAAGTCCAGCC 3499936 29 100.0 36 ............................. TATGTGTAATGTATTTTAATGTTTTCTAGCAACAAT 3499871 29 96.6 37 ................A............ TTTATAAATTCTATGAATAATTTTAAAGAGAGGTTTC 3499805 29 100.0 36 ............................. TGTACATTTGACATAGAAGCTTCAAAATCCATCCCA 3499740 29 100.0 37 ............................. GTAACAGCACGAATGATGGCACAGACCTATCTGCAAT 3499674 29 100.0 39 ............................. AGAAGTACACTTACAAGTAAGATAAAAGACCCAGGTACA 3499606 29 100.0 36 ............................. TCTGTAGCTATATGTGGAAGTAATTTTAGTAGAGAG 3499541 29 100.0 36 ............................. TATTGAAGGGGTGAGAGTTGTGACTAGGCACTACAA 3499476 29 89.7 0 .....G..........A......G..... | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : GGGTATGGAATAAATCTGCTAATAATGATATGTTAAATAATGATACTATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTTGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGATTGTTAAGAGAATTATAGTATAACTAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCGACTACAAATTTTATATGTTACAATAGAATAATTTTGCAGTGAGCGAAAAATATGTGTAAATGGCTGTGAGTTAGTGATGGCAAGGTTTATAACTGAATTTTTGTTTTTAGCTAAAAACACTACTGGTGCCTCACTGCAAATTAACTATTTTAATAACCCTACAAGTGTTGTAATTACTATAGTTTTATTTGGG # Right flank : TTACTTATTCATTAAGAAACTTAACTGAGAGTTTGATTTATATTATTGAATTAGCAAGAGTTTTAGAAAGTAGAAAATTATACCCCAATAATACCCCAACCACAAAAATAAATAATAAAAAATATCCAAAAAAATTAGTATAACATCATAACTAAATAGCTATATACCTACACTTACGAAAACCAACAAAACAATCAAATAACCACTTGTAGACTCCCCTCGTCTCCACCAATTTTGAAAATGAAAATAATAGAATAAAAGGAATTACTTATGTTTGGACTAAGTAATTCCTTTTATTTTGCTTAAAAGCACACAATTAGCACACAACTAGAAGGTTATATAAATAAAAAGGCTGTCGCACTAGAAAATAGTGCTACGCTCTTTTTTGTATAAAAAAATAAATCCCAAGTTCAAAAGAACCTGGGATTCTTGTATAATAACTGTATGCTAAAACAAAATACTACACAAATTGATTATACTACTTATGGTGATAATTATCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //