Array 1 34396-31621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDT02000034.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0036 NODE_34_length_43530_cov_11.576020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34395 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 34334 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 34273 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 34212 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 34151 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 34090 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 34029 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 33968 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 33907 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 33846 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 33785 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 33724 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 33663 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 33602 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 33541 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 33480 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 33419 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 33358 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 33297 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 33236 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 33175 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 33114 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 33053 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 32992 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 32931 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 32870 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 32809 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 32748 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 32687 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 32626 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 32565 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 32504 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 32443 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 32382 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 32321 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 32260 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 32199 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 32138 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 32077 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 32016 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 31955 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 31894 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 31833 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 31772 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 31711 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 31650 29 96.6 0 ............T................ | A [31623] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5444-6082 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDT02000141.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0036 NODE_141_length_7575_cov_10.935687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5444 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5505 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5566 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5627 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5689 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5750 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5811 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5872 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5933 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5994 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 6055 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //