Array 1 443690-441264 **** Predicted by CRISPRDetect 2.4 *** >NC_014215.1 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 443689 36 100.0 36 .................................... CAAAAAATCTCCCTGTTCGCTCTTGTCGCTCCGCTT 443617 36 100.0 35 .................................... GCCTCCCGACATGGAGGCATGGTGCGCCGCATATT 443546 36 100.0 39 .................................... CTTTATTTTTAGGAATTAAAAAGATATAGCCTATTAATG 443471 36 100.0 37 .................................... TGTTGGATGCCTGGCTGGTGGGGATCGTGCGCCACAG 443398 36 100.0 35 .................................... GATCCGATTCCCACCGACAGTCCGCTGATCGGTGT 443327 36 100.0 36 .................................... GACAGGACCACAGGCACGGTCCTGGACCACAAGATC 443255 36 100.0 37 .................................... CTCGTGAGGACCTCACTGACCAGCATCTGCCGCTGAG 443182 36 100.0 38 .................................... GCCCCGAACCCGACACCCACGACCACCAGAACACCCAC 443108 36 100.0 36 .................................... GTTGAGCAGGTGGCAGAATGTACATGCCACGAGACG 443036 36 100.0 37 .................................... TATACAGCCTTCTTCGTAGGAACGTCAACACCTTCAG 442963 36 100.0 36 .................................... GCGAAGGTCGGGCTGTTCAAGGACGACGGCGGCCCG 442891 36 100.0 36 .................................... CCCACCCCTACACAACAGACGGCACGAGCCTCACAG 442819 36 100.0 35 .................................... CATCCTGAATACATTCGGGCTTGAGGACCAACGGT 442748 36 100.0 36 .................................... GGTGGCCGTTCCGATTGGTTTCCGCCGTTCGATAAG 442676 36 100.0 36 .................................... ACGAAGACTGACCCACTCCAGGGACCGGCCCCCAAG 442604 36 100.0 35 .................................... ACGACGATCCATAGTTCCCCAGAACCTCTCTAGCA 442533 36 100.0 36 .................................... ACGTTCCGCACCCGGCGCGGGTATGACCACAACATT 442461 36 100.0 39 .................................... CCGAAGCTCGCTCCTCTGATGAATGCCATCACTTCAGCG 442386 36 100.0 36 .................................... GGGTCCGGTAACAGCGGGATCGGGCACCCTGCACCG 442314 36 100.0 35 .................................... CGAACCGAGCTGCGCAACAAGCCCCATTTCTTTGA 442243 36 100.0 36 .................................... ATGTATTGTAGCCGACTGGCTGATTTTGAGCTGACA 442171 36 100.0 36 .................................... GTCGATGTGATCGGGCGGACCATCGCCAACCATCCC 442099 36 100.0 38 .................................... GGGCAGGTGTGGGAAGACGACTGGGCAGAACTCGCTAA 442025 36 100.0 35 .................................... CCGGCTCTTCAAGGCTGTCCGACCAGACGGGGCCG 441954 36 100.0 36 .................................... CCCGACAAATTTCCTCGCAAGCGGGCCGCGCACGCG 441882 36 100.0 35 .................................... TTCTCCTGAAATGCCGTTGTGGCATCAATAGTAGG 441811 36 100.0 37 .................................... TGGGCTTCCTCCTGTGTGAGCTGAATTTGCTCGACAG 441738 36 100.0 35 .................................... GGCGACAGTGCGCATGTGATCCGGTTCGGTCTTGA 441667 36 100.0 36 .................................... TCAAAGGAGCATGCCCATGAACACCACGGTTGTCGA 441595 36 100.0 40 .................................... GTGGGCGGCGAGGGCTTCCCAGCGGCGCAGGAGCCGGACC 441519 36 100.0 38 .................................... GTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAG 441445 36 97.2 36 .....T.............................. GCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGT 441373 36 100.0 38 .................................... CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT 441299 36 94.4 0 ......T............A................ | ========== ====== ====== ====== ==================================== ======================================== ================== 34 36 99.8 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : TTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //