Array 1 346-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPT01000023.1 Clostridium sp. MCC334 NODE_23_length_144065_cov_60.111332, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 345 32 100.0 34 ................................ CCTACTCCTTCCCCGGCCTCGTTATGTTATTCAC 279 32 100.0 35 ................................ AAAAATCAATTCTTGAATACGTTGGACGAAGATGG 212 32 100.0 35 ................................ GTCATGCGCTGTGTCCTCTCCTCATCGCCATCGGA 145 32 100.0 34 ................................ TTTGCATGCAATCGGATTTGGATCAAGAAGAACA 79 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 35 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : CGATGCTGGTATTGATCACTTATGACGTAAATACAGAAACGACGGCGGGAAAAGCAAGACTCCGTAAAGTGGCAAAGCAGTGTGTAAATTATGGAAGAAGAGTTCAGAATTCAGTGTTTGAATGTCTTTTAGACCAGGCACAGTGCATAGCGCTGAAGGCAAAGCTGACAGAACTTATCGACGAAGAGGTGGACAGTCTGCGGTTTTATTATCTGGGAAATAAGTATCAGACAAAGGTAGACCATGTTGGCGTGGATCATGGGCTTGCGGCAGATCAGGTATTGATCTTATAGCAGGTCTGTGGAGCAGACATTATAGAATGCCGGATATTGTTTTGGTGCGAAATGGAAGCAGACAGGAAATCTCTGGGCGATTCGCACCAGAAAAAATGTACAAAAAATGATTAAAAGTCGGAAGCGGGCTGTGTGTGGAAATATGATATGGGGAAAGGATTGGTAAAAATGAAATAAAACAGATATGGAATTTTGTGTAAAATTGCT # Right flank : TATGAGTGGTAAGTTTGGAAAATTATGACCGTCTACGTCGCTCCCCTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39610-38322 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPT01000011.1 Clostridium sp. MCC334 NODE_11_length_39577_cov_59.412941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39609 32 100.0 35 ................................ CCTTTAATACTCATAAGAATCCTACCTCACATCAC 39542 32 100.0 34 ................................ CAGCGTTTCCGGAAAGAAATGGAAGGTAAGAACC 39476 32 100.0 33 ................................ CCGACTTTACGGAATACTACCGCGTTGCTGAAA 39411 32 100.0 33 ................................ ACCAGCTCAATAAGGTCTGGAAGCGTAACAAAT 39346 32 100.0 33 ................................ CTCCTCTCTTACTTCTTTTTCCAGGTAGGCTGT 39281 32 100.0 35 ................................ CAATACATTCCATTCGGATCACCTCTGTGGATTAT 39214 32 100.0 34 ................................ AAGAGTATGTTGATAATTATGCTGCCAACATGGA 39148 32 100.0 33 ................................ ATTCATACAGCAGTCTGGCGGTGTCGTAAAAGC 39083 32 100.0 33 ................................ CGTCTGCTGCGGGTATATGGATACATGGTCCGA 39018 32 100.0 35 ................................ TGTCGGGGAGGAGATGATCTCGTAAAAGGTATCAT 38951 32 100.0 34 ................................ TGCATTAATTTATAGCTCATGGTCTGCCCTCCTT 38885 32 100.0 35 ................................ ATTCATGGGATTACGGAGTGAGTATGGAACAGTAC 38818 32 100.0 36 ................................ ATTTCTATTGAGGGGCGAGACAACCGATTATATACG 38750 32 100.0 36 ................................ ATAGTCCGGCATGGTTCTTCCATCCTCCCGGCTGTA 38682 32 100.0 35 ................................ CCCTACATTGGCATCAAGAGATTTTAAGGATCCTC 38615 32 100.0 34 ................................ GATCACATGTGTGTATACCTGACTCTCGTATCCA 38549 32 100.0 34 ................................ AGCATCCCCTCGGTGGGCCTGTAAGATCGCCACC 38483 32 100.0 33 ................................ ATGTAAATATTTCCATTGGGGGCCTGGCTGATC 38418 32 96.9 33 ...........C.................... AAACAATCTTACAGTAGATTCTAACGGAAACGT 38353 32 90.6 0 ...........CA..........A........ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.4 34 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : GTGGATTGAAATTGCTGGCATAAAGGGCTTGTGGACGCCCAGGCATA # Right flank : AGCATAGGCGGTCTTCAGGTCATGAATGAAGCGTCGATTTATGGCATTAGGGTTGCTACAAAAAATCTTGATGTACTGGGACAGGTTTATCTGAGCTGTGCGGGAATAAAAGAGGATATTGACTATGGCATAGGCCGAATGGAAGCAATTACATCTGGCGCAGTACCAGCAGTCATAGATCATGGAAAGGTGTTGGATTACCAAAAGGATCGCAAAGGCCGCGGATGGGATGGCGCTGTTATCGGAGAAAATACGCATTGAAAAAGGGGAATTTTCGGGAGATTATTTTGTCGTTTTTGCGGTGAAGGTCGCAAAAGATAACCGTTTGTATTTACATGAGATTTATCAGAAAAAACGGAGGTAATACGCCGATCAAGACCAGGGCCATCCCGAAAAACGGTTCCCCCAGCGACGCTCTTGCCTCCTCTATATACAGTATATTTAAAAAATTAGAGGATGTCAATGCGGAATTTGGAGAATCAAATGAAGCCAGAAGCGAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 97608-97374 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPT01000002.1 Clostridium sp. MCC334 NODE_2_length_215979_cov_61.724575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 97607 33 100.0 35 ................................. TGCCCAATGATAAAATGTATTGTAGTAATTGCCTG 97539 33 100.0 33 ................................. CATCAACCAGAACACATTTTCGTTTCCGTCTTT 97473 33 100.0 34 ................................. TCCCGCGCCAAATCCGCTCTCAGAGAGGGCTTCT 97406 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 100.0 34 GTCGCTCCCCCCACGGGGAGCGTGGATAGAAAT # Left flank : CATCGGCTTTTGCATGTGAAGCCAAAGAATGAATTGCCGAAAAATATTCAAGATTATGAAATCACTTGTGGCGAATTGCCTGGACTGTCAGTAGAGGTTTATGATTAATTCTGATGAATATTTGCAGAGACCTGATACCCAGCACTTTTTTAACGCAGGCAAGCGGATATCTGTGTACCTATACACTGGAAAATGTTCTGACTGTTTATCCTATGCCAAAAGATGCCGTTATCTACCATGACTGCGGAACGCATTATACCATTTTGTTGAGATGCAAATAATATCACCAAAATACTTTTTTATTAGTGCCAGTGCGAAAGGGAAGCAAACATAAATTCCTTAAGAGACTCGCACTCGAACTTTTAGAAAAATAAATATATCTATTTAAAAATTTGGCAAAAACCCTCATAAAATTACTTTTGAATTGTTGGTTTCAAAAAAAATTATCAGATTGCATAATAAACTGTTGCAAATATGAATGGAATATTATCATGTTTGCT # Right flank : ATGATGATCGACTGCTTGTAAAGCCCACTAAGTCGGCAATTGCCTATATGGCGGATCCAGTATATGAAGCACCTTATGAGGGAGCAAAGGAAATGCTGCTGGTAGACGAGGTTGATCAGAAAGAATTTTTAACAGGTCTGTTTCACGCGATGTACGAGGAACTGCCAATGCCTAAGCAAAAAAAGAAAAAATAGGTATTGCGAAGGGGAAAAGGAATAAGGCTGTTTTACGAACATAGCGGAAGGACAGATAAATCATGAAGCGGCAAAACGGGATCTATCTGTACAGGGGCACAAGAGCTGAACACTGGTTCAAACACAGGGCGACCGATCATTTGCTGAAATGTTTCCGTTTTATACAGCTGATCAGAATATGAAACCAGAAAGAAAATCGAACAGGAGCAGGATATATGGAACTGAAAAAAGTATGGATGTCCCCGGATACGAAAAAGAAAAGCAAATATGGATACCGGGCAGTCGGTGTATCCTTGGCATCGTTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCACGGGGAGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //