Array 1 44478-39993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWND010000004.1 Ralstonia solanacearum strain NCPPB 3985 NCPPB3985-PB17_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44477 29 100.0 32 ............................. CAAATATGTATCACGAGTACAAAATGCCACCA 44416 29 96.6 32 ............................A ACCGGGGCGCTCGAACCAGACGAAACGCGGCC 44355 29 100.0 32 ............................. GGCGCCACCGTGGCTTCGATCGTCGCGGCCGG 44294 29 100.0 32 ............................. GTGGCAGTATGTTTTTCCATCACGAGTCACAC 44233 29 100.0 32 ............................. GATTTTCGCCGTCTGGCGGAATCCAAACGAGC 44172 29 100.0 32 ............................. GCCTCGTTCGCCTATCTGCGTAGCCGGTTGCG 44111 29 100.0 32 ............................. CAGAAGGGCGAGATCGGCAAGGCCCTGCCGGA 44050 29 100.0 32 ............................. ATCTATGATGAGGACCTCGATGATGAGACGCG 43989 29 100.0 32 ............................. AACGCCTATGCGCCAATGATTTTCGCGCCCCC 43928 29 100.0 32 ............................. GCCCAGGGCCTCGACCAGCTCGCGCCGTGCCT 43867 29 100.0 32 ............................. GCCGAGGTTTGCGCGCGCGGTGATGGCGCTGG 43806 29 100.0 32 ............................. GCCACCGATTTTCACACCATCCCGCTTTGCCC 43745 29 100.0 32 ............................. CCGATTTTCACGCCTGAGCAGATGGCCGGCCA 43684 29 100.0 32 ............................. ATCATGACGCATGCGATGCTCTTCCGAGTGGC 43623 29 100.0 32 ............................. TTGGGTGTATTCCATGGTGTTTTTGTTGCATG 43562 29 100.0 32 ............................. CGGACATCGAGGCCGAGATCGTCGAGGAATCG 43501 29 100.0 32 ............................. GTGGACATGATGGCGTTCATCTACATGGACAA 43440 29 100.0 32 ............................. ATCCGGGCGACCGTTGAGCATGGCTGAATACG 43379 29 100.0 32 ............................. TGCGCGAGGACATGCTTGGGCATCGAAAACTC 43318 29 100.0 32 ............................. GCGACGCGTTCCTCTTTCGAGAAGGAGTTTGC 43257 29 100.0 32 ............................. TGCCCGCGCGCGGCGGGCGTTGGTTACAGACC 43196 29 100.0 32 ............................. TCCCGACGCTCGGAACAAAGCCGAAGCTGGAG 43135 29 100.0 32 ............................. GCGTTCGACGATGCGGCGCTCCTCATCGGACT 43074 29 100.0 32 ............................. GGAGCCGGAAGAGATGTCGGCAAAGCCGATGC 43013 29 100.0 32 ............................. ATCCAGCGCATGACCGAGTTCGATTGGTACAC 42952 29 96.6 32 ............................A ACCTGTATCCACGGAAATTGCGGAAGAAATGC 42891 29 100.0 32 ............................. GAATCGTGCAAGCGATCATCCGGGTGAACGAA 42830 29 100.0 32 ............................. TAATTGCTCGCGATATGTGAGTGGCTTATCTC 42769 29 100.0 32 ............................. TCACTTTCGTCGCGTTCGCCAGCAACCTGGGC 42708 29 100.0 32 ............................. GATGTTTTCCGCGTGAACGTGGAGAACATCGG 42647 29 100.0 32 ............................. TAACTGCTCGCGATATGTGAGTGGCTTATCTC 42586 29 100.0 32 ............................. CCAGGGCAGTTCCTGATGAACGTGACCTGGGA 42525 29 100.0 32 ............................. CATTCAACCGTAAGTAACACAACAGGAGTATG 42464 29 100.0 32 ............................. GGGTTTAACGCCACCGGGGAATACGAACAGAA 42403 29 100.0 32 ............................. TCGATGGCGCCGGCCTACGACATCGCTGACCC 42342 29 100.0 32 ............................. ATATCCGCGTGCACATCGGCAATAGCATTTAT 42281 29 100.0 32 ............................. TCGCTGGCGCCGGCCTACGACATCGCTGACCC 42220 29 100.0 32 ............................. CCCTCGCCCCGCATGTAGGCGGCGTGCTCATC 42159 29 100.0 32 ............................. ACCGCGCTCAACGAGCGCGATGTGGGTGGCGG 42098 29 100.0 32 ............................. GGCGGCGGAGAGGAGTTGAAACGGCAGTACGT 42037 29 100.0 32 ............................. CGCACGCGTTCTCCGTCAGCTCGATGGAGCTG 41976 29 100.0 32 ............................. GCGAATACACACTGTTTCATGATCTGCATCGT 41915 29 100.0 32 ............................. TGCGTTCTTTTGCGCCAGCAATGCGTTATAGG 41854 29 100.0 32 ............................. TTGTTATATTGCTTATTGAGCGGGGCTTTGCG 41793 29 100.0 32 ............................. GGTACGCCAAATTTCGTTACGACAGCGATGGT 41732 29 100.0 32 ............................. TTTTTGCCATCTCCCCAATGAGGGAGTTTTGA 41671 29 100.0 32 ............................. AGGCCCGCGCTTCCCGCATTCGCGTTTCCACG 41610 29 100.0 32 ............................. CCTGCCGTTGCGGCTTCAATAGCGGCCCGTAG 41549 29 100.0 32 ............................. CTCAGCCCATGCCGGCAGTGGAGGAACCGGCC 41488 29 100.0 32 ............................. GTACGTCGCTGACGGACATGAACACGCATGCA 41427 29 100.0 32 ............................. ATGCGATTCACATCATAGGGGAGGTCCTGCAT 41366 29 100.0 33 ............................. CACGCGGCGCGTGTCGTAAATCTTCGGAATCAG 41304 29 100.0 32 ............................. CGGCAGCCCGGCAGGCCGAGCAGGCCAACGCC 41243 29 100.0 32 ............................. CGGTTTCGGTGCGATCGCGCAACGTCTGGCGG 41182 29 100.0 32 ............................. AAGAATTTCCAGGGGGAGAATGAGCATGCCGT 41121 29 100.0 33 ............................. TGCCGCAGCCTCCAGCGTAAATGTGGCCCCGTC 41059 29 100.0 32 ............................. CCGAGGAACCGCAGAATCAGCTTTTCGATGCG 40998 29 100.0 33 ............................. GTGCGCGTGCCGATCCCAAGCGCGGCGGCCAGC 40936 29 100.0 32 ............................. CGCGATTCGGTGGCGCAGGTGTTGAACAACAT 40875 29 100.0 32 ............................. CCTGTATTGGTTCGGCTTGTTTGGGGCACCAT 40814 29 100.0 32 ............................. CATCGTGAAAAATCGGAGGTACGAATAGTGGC 40753 29 100.0 32 ............................. AGAACTTCGGCTACGCCCGCGACCGCCTGATC 40692 29 100.0 32 ............................. CCACGGCCCAGCGGGTCGAGTCCTTCAGTGAG 40631 29 100.0 32 ............................. GTTGACATGCTGTCGTTCATCTACATGGATAA 40570 29 100.0 32 ............................. CTGGTCAGCCGGTACACCACCGACCAGCAGGC 40509 29 100.0 32 ............................. CCGTGTTCCATTGATGCTGCATGTCGTCTGCA 40448 29 100.0 32 ............................. AGAGCGCGGCAATCCGCGCCGCCTGGACGGCA 40387 29 100.0 32 ............................. GTCACGTTCGTGTCGTTCGCTCAAAGCCCGGA 40326 29 100.0 32 ............................. TCGGAAATTCGCGCTCTCCGTTGCGATATTGT 40265 29 100.0 32 ............................. GAGCGCTACATCGAGGAGGCCACCGCGCAGAT 40204 29 96.6 32 ............T................ GAGGAGACCTGGGTGGAGAACCCGTCGGCGCT 40143 29 96.6 32 .............T............... CCCATCACCGGCTCGGCCTTGATGGCAGTCTC 40082 29 93.1 32 ................TA........... GTGAAGCTGCGCGAGAACGGAGTACCGTTGAT 40021 29 82.8 0 ...........A.AC.........CG... | ========== ====== ====== ====== ============================= ================================= ================== 74 29 99.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATTCCGGCCATCGAGGAGGCACTTGCGGCGGGTGGGATCTCGCCCCCGGACGCCCCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGTGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGATGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCTTTTCAGCCGGCGGACAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGTTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : CCGGTGGTCATCCAGCCGATGTCACGACCCGGATGCCGCTACACGGCTAGTGCCGGCTTGACCGCGCCTGCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCTGGCGGCGACACGACGTCGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCTGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56857-53412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWND010000004.1 Ralstonia solanacearum strain NCPPB 3985 NCPPB3985-PB17_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56856 29 100.0 32 ............................. CGCATTCGCCTTCCGTATGTGCGCTGGCAGCA 56795 29 100.0 32 ............................. CGCATTCGCCTTCCGTATGTGCGCTGGCAGCA 56734 29 100.0 32 ............................. CGCACGACGATGTAGGCCGCGACGATCTTTCC 56673 29 100.0 32 ............................. CCGTAGGGATGGGAGCGTGGCGCCAACCACCC 56612 29 100.0 32 ............................. TCGTGCGACTCGTGCGCGCAGGCCATCAGCAG 56551 29 100.0 32 ............................. GCGGCGGAGCAATATGTAAAAGACAACGGCGC 56490 29 100.0 32 ............................. CAGCCGGCTCCAACACGCGATGCTTGGCGGCC 56429 29 100.0 32 ............................. AACTGACTGGCAACCAGGAGGCCGGCGAGCAG 56368 29 100.0 32 ............................. GTCGATGATGAGGACCTCGATGATGAGACGCG 56307 29 100.0 32 ............................. CACATGTGCAGCTCGCATTCGACCGTGATGCC 56246 29 100.0 32 ............................. GACGGCACGCGCGGTAACGCAGTGCTGCGCGA 56185 29 100.0 32 ............................. GCGAGGGCGATGATGAGCTGACGCTGCAGTTC 56124 29 100.0 32 ............................. CGCACGACGGGTCTCCGGGGTGACTCGTTGCT 56063 29 100.0 32 ............................. ATCCCGTCCGGTTCGCATTCGCGGCGGCAAAG 56002 29 100.0 32 ............................. CTGGTCAGCCGGTACACCACCGACCAGCAGGC 55941 29 100.0 32 ............................. CCGAGCCCCACGCCGCCTTTCCCTCGTCGGCG 55880 29 100.0 32 ............................. AGGAATTTTCAGGAGGAGAATGAGCATGCCGT 55819 29 100.0 32 ............................. TTATTAAATATTTCAAGCAAATATGTATCACG 55758 29 100.0 32 ............................. TACAGCTCGTTGCGGAATTTCAGCAGCGCGTT 55697 29 100.0 32 ............................. ACGCGCAGCGGCTGTTCAACATGCAGATTTCT 55636 29 100.0 32 ............................. GTTATCGAGCGAGCTGGTGTAGCGGTTGATGG 55575 29 100.0 32 ............................. TCCCGACGCTCGGAACAAAGCCGAAGCTGGAG 55514 29 100.0 32 ............................. AGCCAGAATTTGCGACAGCGATGCCTGGCGCG 55453 29 100.0 32 ............................. CCGATTTTCACGCCTGAGCAGATGGCCGGCCA 55392 29 100.0 32 ............................. ACAGGCCTTGGCGGCGGCATCCCCGCGCAACC 55331 29 100.0 32 ............................. GCTTCCACGACATGCTCGTGATGTCCAAGTTG 55270 29 100.0 32 ............................. TCCGGGGACCGGCAAGAGTCACCTCGCCATCG 55209 29 100.0 32 ............................. GTCATGGACAAGGCACGCGAGGCCGCCGTCGG 55148 29 100.0 32 ............................. GCAGACGTATTCGGCGCCATGTCTCTCGTTGC 55087 29 100.0 32 ............................. CTCCAGCATTCCGGCATCGCGCAACAACGTGT 55026 29 100.0 32 ............................. ACGGCCCGCGCTGGAGTGGACGAGCTTCGTGC 54965 29 100.0 32 ............................. CTGGCCGGATGTCATCGCATCACCCCACGTAC 54904 29 100.0 32 ............................. GTTCTGCGTTCGAGGCGCAGGACAAGGACGGC 54843 29 100.0 32 ............................. CAGTTGTACGGCGTCGTTGGCACGCAGAAATC 54782 29 100.0 32 ............................. CGCGTGCGCAGCGCGGCATCAGATTCGGCGTC 54721 29 100.0 32 ............................. CAGATGCGAACACGGATTCCGGCGCTGGCGGC 54660 29 100.0 32 ............................. TCGACCGAGCGCTTCATGCCGATCGTGCGGAG 54599 29 100.0 32 ............................. CTCAGTGACGCTGTATGCCGGCTCACCTTGCA 54538 29 100.0 32 ............................. CGTACGCTGCTGTCAGCTCGTCGCTCGCACGT 54477 29 100.0 32 ............................. CTGCTGGCCGAGCAAGACAGTTTCACTGGACA 54416 29 100.0 33 ............................. GATGTTGGTAGCGAACCCCCTCGCATTGCACAC 54354 29 100.0 32 ............................. TCCTACATCGGCAGCACCGTCATGACCACGCA 54293 29 100.0 32 ............................. TCACGTTCATCAGGAACTGGCCGGGTTTGATG 54232 29 100.0 32 ............................. CTGCCGTACTTGTCGAGCTGCTGCGCGAGGTA 54171 29 100.0 32 ............................. TCAGTCGCAGATCGATGCGCTATCGTCGATCC 54110 29 100.0 32 ............................. ACGATGCGTTCAATGGGCCATGCCCAGAGTGG 54049 29 100.0 32 ............................. CGTCAGCAGTGGTGCTTTGCGACGGGAGGTGG 53988 29 100.0 32 ............................. CATTTTCAACATTTTTCCTCTCCAAATGAGCG 53927 29 100.0 32 ............................. ATCCGTTCCTGGTTGTCGATGTACGCGCGCTT 53866 29 100.0 32 ............................. CTTCATGGCGAGCTGGCGCTGCTGGAATGCTA 53805 29 100.0 32 ............................. GCCATCGGCAGGCCATCGCGGATCACGAGGCG 53744 29 100.0 32 ............................. CTGGTCCGCAACTCCGGCGAGATCAGCCACGT 53683 29 100.0 32 ............................. ACACCGCGATGACGGCGATGCCGCGCTCCAGA 53622 29 100.0 32 ............................. GACGCGTTCTGGAACATCAAGAGCGTCACGAG 53561 29 96.6 32 .............A............... GTGCCGGCGACCAAGCGGCGCTTCGGCAAGAA 53500 29 79.3 30 A..........TCA..........TG... CTGCGCCAACGGCTTACCGTTGATCGTGCC 53441 29 75.9 0 .C..C......A..T........C.G..T | C [53431] ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.2 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGCAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TCAGCCAGCCCCAGTTCCTCGATCGTCTGCAGGAAGATGAAGAACGTTCATGGATTAACGATTTTGCTATCTCATTTGGATAGCTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGCTGTGATCGCCCGTCCGGGAGCGAGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCCTTGGATGTCGCTGCTTGCGGCGCGGAGTTGCTGCGCTTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCACGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //