Array 1 26238-29707 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIGH01000003.1 Streptococcus suis strain LSS30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26238 36 100.0 30 .................................... CGAGGAGAACCCGTTGACGGGCGAGGATTT 26304 36 100.0 30 .................................... AAATCTCTTTGCTGACTACTCTGACGAAAC 26370 36 100.0 30 .................................... CTTTGCTACATTTCGAAAACTACTTCGTAT 26436 36 100.0 30 .................................... ACAGGTAATTGTTGGATTGCACCGTTTACG 26502 36 100.0 30 .................................... CAAAGTCATTTACGCAAAGCCGAAAAGTCT 26568 36 100.0 30 .................................... CAAGGTCTGCTAGTGCCTCTTTGCCACTGA 26634 36 100.0 30 .................................... TAAAGACCGTGACCAATTGGAGCAAGGGGA 26700 36 100.0 30 .................................... CGAGTCTGTATTAGAGCTCTTCGCCGCTTT 26766 36 100.0 30 .................................... TTGCTTTAGAATATCCGCTCTTGTGTTCTT 26832 36 100.0 30 .................................... CAACACCTTGGGTAATCAAGTATGAAGCAT 26898 36 100.0 30 .................................... ATGCGTTTTGCTGAAGCAGTTGGATTGACT 26964 36 100.0 30 .................................... CAAGGACAATTCTAGGTATTTCTGCCCTTT 27030 36 100.0 30 .................................... AGGTCAAATCTCAACTATCACTAATGCAGA 27096 36 100.0 30 .................................... TCATCGCAGCAGTGCATCTACCAATCTATG 27162 36 100.0 30 .................................... TACTCCAATTAGGAATCTCTATGTTCTTGT 27228 36 100.0 30 .................................... TACTTACCAAGTTGTTCCAACCGTTCGAAA 27294 36 100.0 30 .................................... AGAAAAAACAGGTAGCCGTCATCTCGTCTT 27360 36 100.0 30 .................................... AAAAGGTTTTGCTTCAACGAATATCGTCCT 27426 36 100.0 30 .................................... CAAAGTGGTAATTTAATTTCAGATGTTTAT 27492 36 100.0 30 .................................... TCTGGACAAGGAATTTTACTGCTAGGATAT 27558 36 100.0 30 .................................... CTCAAAGTGTAGAACGGTAATAGCGTAGCT 27624 36 100.0 30 .................................... AAATATTTTCTTTTATATTCATTTAATTCA 27690 36 100.0 30 .................................... CTGCCGTTCCACCGAAAATATTTATATTAC 27756 36 100.0 30 .................................... TTCACCACTCTTTACTCTACTAATGGTAGA 27822 36 100.0 30 .................................... CTAGCGTTTACGGGTAGATAGGTTGTTGGT 27888 36 100.0 30 .................................... ACAAGGAGACGGAGAATATTGCGATCAGTT 27954 36 100.0 30 .................................... TAATGCCTCAGCAATTGCTTCTAGCAGTTC 28020 36 100.0 30 .................................... TTAGTAATCGAATCGCCTGCTCCGTCTTAT 28086 36 100.0 30 .................................... AAGCACTTTATTGGTGTGGGCATCGGTCAA 28152 36 100.0 30 .................................... TTCACTATTCAAAAGCTGGTATTCAATTTC 28218 36 100.0 31 .................................... TTATCTGCCACGGTTGTAATGCCTTTGCGCT 28285 36 100.0 30 .................................... AATTATTTTCCTTATGATGGTACTTATGAT 28351 36 100.0 30 .................................... AAGATATATGCCAATTAAAGTTAGAAAAAA 28417 36 100.0 30 .................................... TGAAATCTTCTAAAGTCATTGTATATTTAA 28483 36 100.0 30 .................................... TTACTATGGTAACGGTCAACCAGCAACCAA 28549 36 100.0 30 .................................... AAAATTTTATCTTGATAAAGCACACAAACA 28615 36 100.0 30 .................................... GGACTATGTTGCAAAGTCAAAAGCTTGGTA 28681 36 100.0 30 .................................... AGAGGCTTTACGATTTCATAAGCAACCAGA 28747 36 100.0 30 .................................... CGACAGATGCTGATATTAAGTATAGAGGTT 28813 36 100.0 30 .................................... AAATCGCCTTGACCTTCTTCTTGAACTGTT 28879 36 100.0 30 .................................... TGATTGGCAATCGAAATTTACCACAAAGTA 28945 36 100.0 30 .................................... ACTTTGCTTGTGAATAAGTTAATCTGCTCT 29011 36 100.0 30 .................................... GTGACAACCTAGATTTGGGCATGAAAATTG 29077 36 100.0 30 .................................... TTACTAGACTTAAACTTACCAGAGTTGTTA 29143 36 100.0 31 .................................... TTCTGACCGCAAAGGGTTTGAATACCGGATA 29210 36 100.0 30 .................................... CGAACCAAAGAAAGAACAAGGTTTGGGAGT 29276 36 100.0 30 .................................... GTATGAAGATATTTCTATTCCAGGTAGGGA 29342 36 100.0 30 .................................... TATCATCTCAACGCTGATATGAATGTCATA 29408 36 100.0 30 .................................... TTACTTTAATTGGTAATGGTTATGACGCAT 29474 36 100.0 30 .................................... GTGAGTCAATACTATCATGACCGCTATACG 29540 36 100.0 30 .................................... TAAATTAGCAGCGATTATCTTGCATCAGTT 29606 36 100.0 30 .................................... GGCTTTTTTGATTTTCCGTCTGGTTAAATT 29672 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 53 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTATTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACCGACGGCATGATTGTTGGACTGGGGACTGGCTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //