Array 1 21954-22944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVGM01000005.1 Serratia marcescens strain 454_SMAR 260_94218_2605210_14+,59+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21954 28 100.0 32 ............................ GTTTGATAACCGAAATAGCCACCTAATACGGT 22014 28 100.0 32 ............................ TCTGCGTGTGGAATACACCAGCGTGATGGCAC 22074 28 100.0 32 ............................ TATGTCGATCGTTTGGTGTACGCGCAATGACG 22134 28 100.0 32 ............................ GGCCATCTTCATCAATACGCCTTCCATGCAGA 22194 28 100.0 32 ............................ CTAGTGGGGCGGTCACTTAAAGATCTGCATGT 22254 28 100.0 32 ............................ TCAACAAGCCGGACTGGGCTAGGTAGATATCT 22314 28 100.0 32 ............................ GTCCGGGGTGGTCTTGTCCGCTTCTTTCTTCT 22374 28 100.0 32 ............................ GGAGAGTGGGGATGGTCACGATACCAGACGAT 22434 28 100.0 32 ............................ AGCGAATGCTACGGAAACTCTAAGCTATGATT 22494 28 100.0 32 ............................ ATGCTGCGCAGAACGGCCAGGCTATCGCTACG 22554 28 100.0 32 ............................ ATAGCGCAATCCTTCACGCGATTAGCGTATGC 22614 28 96.4 32 .........................C.. TGAACCTCACGCGCGCGTGCGTACTGTTGCAT 22674 28 100.0 32 ............................ AGCACACCGGCAACCCAGGGGGCATAGTCCGG 22734 28 100.0 32 ............................ CATGAATCCGCTCTGCTGGCCGATGTTTCAAC 22794 28 100.0 32 ............................ AGAACAGTGAGCTTACACAGGAAGCCGTTGAA 22854 28 100.0 32 ............................ ACAACGCCCCCGTCCAATTATCTCGGGCAGAT 22914 28 96.4 0 ....................A....... | A,A,G [22934,22937,22940] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCACCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31768-33274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVGM01000005.1 Serratia marcescens strain 454_SMAR 260_94218_2605210_14+,59+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31768 28 100.0 32 ............................ TATCAGGCAAATCTGACGGCACGCTGCCCGGA 31828 28 100.0 32 ............................ CAGCCGCCCATCTCTTTAAGGGCAAGCAGGGA 31888 28 100.0 32 ............................ TAGCCGTCCGCCCCTTCTTCGCACATCGCGTC 31948 28 100.0 32 ............................ CGGATAGTTGCCGCCGGTGATGTGCAAGAGAT 32008 28 100.0 32 ............................ AGGCAATCATAGACATACCGAACGGCCAGCGT 32068 28 100.0 32 ............................ TGAACCAGGCGTATCGAGAAACAGGCGAACAG 32128 28 100.0 32 ............................ TGTAAGTGGCGGTTACAAGTTGGCAAGTGGCT 32188 28 100.0 12 ............................ CACATCGCCCGC Deletion [32228] 32228 28 96.4 32 T........................... ACGGTATGCGGCTGACGTTCGGCGAGGCATAC 32288 28 100.0 32 ............................ AAACACATGCTGCGGCTGCGCCGGGAAAATAT 32348 28 100.0 32 ............................ TGCTCGAACTAAACGGAAAGATACCCGCGACA 32408 28 100.0 32 ............................ AGGAATCGGCGGCAGGTTTTCAAGTCGGCGAA 32468 28 100.0 32 ............................ AAACAGCTTGCTGTGCCGTGTTACTCGCGACT 32528 28 100.0 32 ............................ GACACTGGGCCGTCGTTCCAGAGCATGAAATC 32588 28 100.0 32 ............................ CGTCTCCGCCGTCTGATATTGAACCGTAAGGC 32648 28 100.0 32 ............................ TACTCGACTAGTCGCCCGCGTGCGGTCGCCAA 32708 28 100.0 32 ............................ TGGCTGAAATATCTCATAGCTTGCGCCGGCCA 32768 28 100.0 32 ............................ GTTGACGAACACCCAGCGCGGCAACTGCTGGC 32828 28 100.0 32 ............................ GTTATATGAGAGGTTTCCGCCGATTGTTACGC 32888 28 100.0 32 ............................ CACGAATCAGGAAAATGCACGATTGCACCGGC 32948 28 100.0 32 ............................ GTTTTCGCCTGTGGCCGCTCAACCGGTGATTA 33008 28 100.0 32 ............................ AGTGCGGCCGTCAGCGTTTCGCTGCCGGTGCG 33068 28 100.0 32 ............................ AACAAGGCCGCCGCCGTTCCTGAAAATACCAC 33128 28 100.0 32 ............................ TGATGAGCGGGGCGGCGCATCCATCGCGCAGT 33188 28 96.4 32 .................T.......... AACTTCGGCGGCGCGCGCATCACCGGCAAAAT 33248 27 85.7 0 .............C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.2 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GATGCGCTGACGGCGCTGGGGGAATTCGACTGGCTCAAAGGACTGCGGGACTATACCGACCTATCGCTCATCCAGGCCGTGCCTGCTGAGGCGGTATTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTAGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTCAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAAGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCT # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACTGGGAAGCAAATACCCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGTAGCGCCTTGGCGCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCGCTCGGCAAACGCAGCATATAGAGGTGCCAAACTGGAGTTGTCATCGTTCTTCCGAATTAGATAAGGCCACAGTCTGTCGCTAGAGTGCGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTTATCATCAACTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //