Array 1 94579-95949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWK01000020.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N32788 N32788_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94579 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 94640 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 94701 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 94762 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 94823 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 94884 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 94945 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 95006 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 95067 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 95128 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95189 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95250 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 95311 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 95372 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 95433 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 95494 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 95555 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95616 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95677 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95738 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95799 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95860 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95921 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6242-7978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWK01000022.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N32788 N32788_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6242 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 6303 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 6364 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 6425 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 6486 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 6547 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 6608 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 6669 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 6730 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 6791 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 6852 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 6913 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 6974 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 7035 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 7096 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 7157 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 7218 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 7279 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 7341 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 7403 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 7464 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 7525 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 7586 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 7647 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 7708 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 7769 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 7830 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 7891 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 7952 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10791-10458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWK01000055.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N32788 N32788_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10790 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 10729 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 10668 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 10607 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 10546 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 10485 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATAC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //