Array 1 658-1357 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000118.1 Nocardiopsis halophila DSM 44494 contig_118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 658 29 100.0 32 ............................. TCGCAGGAGACCGCGTAGTAGCCGGGGGTGTC 719 29 100.0 32 ............................. CGTCCATCGGGCGGTCTCGCCGCCGTCCCCGC 780 29 100.0 32 ............................. ACGAAGCCGTCGGGGGCCTCCTCTGCGGCCGT 841 29 100.0 32 ............................. TCGACGACGAACTGATCCTTCGGGTCAGGCGC 902 29 100.0 32 ............................. TCCTGCCGCAGCCAGTGCCCCGGGTAGTCCGG 963 29 100.0 32 ............................. CGGCCCAGGCCCGCGCCGACATCGACCGCCTG 1024 29 100.0 32 ............................. ACCCAGGACGACATGGACTTCATGGAGCGCAA 1085 29 100.0 32 ............................. GTGGGGCGGTTCCCGGAGCGGATGCGCCATGC 1146 29 100.0 32 ............................. GCCCGCGGCTACGACCGCGCCGACCTTGAGGA 1207 29 100.0 32 ............................. GTCGCGACCCTCATCCCGGTGTCCGAGGAGGT 1268 29 100.0 32 ............................. ACGGTCCAGCCGAGCACGGGCGGCACGGCGGG 1329 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GCGAGCCCCACGCCCGTGGGGATGGACCG # Left flank : GTTCCGGGCGGCACCAACTACGGCGACGACGTGGCCTGAGGGGGAGTGGCGTGGCGAACATGGTGGTCATCGCGACTGCGGCCGTTCCCCCTCGTGTTCGAGGCGCGCTGAGCCGTTGGATGATCGAACCCAGGGCGGGGCTCTACGTGGGAACCCTCTCGGCCCGTGTGCGTGAGGAACTGTGGGAGGTGGTCAGTGCCTCACTGGGGGAGGGGTCGGCGGTGTGCATCCATCCCACGGACACTGAACAGCGATTCCTCGTCCGCACGGCCGGCCCCCAGCGCCGGGAGGTCATCGACTACGAGGGCCTCCAGCTCATCCAGATGAATCCGGAGGAGCATCGCGACATGGAGGATGAGTCCGGTGGATGGCCTGTTCCTGAGGGATGGTGAAGGATTGATGAATGCGAAGAGTAGTCGAGTGACTACCTACCCCCTTGGTGAGGGGCTGATTTTCGATAAAGAAATGGTAACGCCCTAAGTTCTCGCAGGTGGACAAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 31-547 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000119.1 Nocardiopsis halophila DSM 44494 contig_119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. CGCCCGGGGGAAATGGCAAGAGACCTGGGCAA 92 29 100.0 32 ............................. CCATCGACCACGCCGTCACCGACTGGGAGACC 153 29 100.0 32 ............................. AACGTCGAGTCCGGCGGCTCTGGTGGTGTGCG 214 29 100.0 32 ............................. GAGTACGTATGGACGTGTCCGTTTTGGACTCT 275 29 100.0 32 ............................. ACTGGGTGGCGCCAGCCGCCGGTCGAGGTCTG 336 29 100.0 32 ............................. TGGTCACCAGGTCCTGGCCGATCACGGATTCC 397 29 100.0 32 ............................. TCGACCATCCGCCAGATGCGGCACCGATTCCG 458 29 100.0 32 ............................. GGGCGCCGCCCTGCGATCGCGTCACGCGCCCG 519 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GCGAGCCCCACGCCCGTGGGGATGGACCG # Left flank : ACGCCCCGCACCGGCGACACCACCGTGGCCG # Right flank : GCTCCCCCGCTACGGCGCGGACGGCGATTACGGGCGAGGAGCTGTCGGCTGGAATGTCCTCGGCGGAGGTCGTCGCCTTGCTGGAGGACGTCGGCGGATCAGCGCATGGGCTCGTACGGCTTGAGCGCCTCCGACACCAACATCGGGCACGCCGGGGTGTACCTGGGCGAGGTGCCTAAGTAGAGTGGCGCCGGATGAATACGCCAAGGCCCCGGCTTCGGCCGGGGCCTTCGGTCTGTCACGGGATATCAGAGCTGGCCGGTCTGAACCTCCCGCAGAAACACGGCCCACTCTCCCGAGGGGAACAGCAGCGCGCCCTGCTCACGATGCTCGGTGTCGCGGACAGCGTTGACGCCCGGGGCGTTGGCGACCTCCACGCATTCCCGGGCGGTTGAGCTGTAGCTGCTCTTCCGGAAGGTCAGCTCAGGCTCAGCGGATGAATACACGGTCGGTCCTCACTCCAGTTCGGCCATTAGGTCTTCCATCAATCCGATCGACTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 363-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000017.1 Nocardiopsis halophila DSM 44494 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 362 28 100.0 33 ............................ AGAGTGCCGCGGCCGCCGTCGCCCTCGTCGAGC 301 28 100.0 33 ............................ CGGATCGCGGTCGGGAGGACGTTGGCCTCCGGC 240 28 100.0 33 ............................ GCACCAGGGGGCGCCATTCATTCCGTACCAATT 179 28 100.0 33 ............................ GATCCACATCGAGTCCCCGAGGCGGCCGCCCTC 118 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGAGCCCCGCAGGCGCGGGGATGGACC # Left flank : CGTCCGCTGGGGGGCGACGGCCGAAGTACTGGGAGCGGTGGACGCGTCCCAGGCGAAGGGGGAGGAGGCGGTCTACCCGAGCGAGATCGCCCTGTCGGCCTCGGGAGAGCGGCTGTACGTGGCCAACCGGGGCGCGGACACGGTGACGACCTTCGCGGTGGAGGAGGGAGGGGCGTCCCTCCGCTTCTTGGAGGAGGTGGAGACGGGTGGTGAGTGGCCGCGCCATTTCGCCATCGTCGACTCCCACATCGTGGTCGCCAACCAGAACAGCGGCACGATCACGAGCCTCCCGATCGACGGCTCGGGGGTGGCGCAGGCCCCGATCGACCGCCTGTCCATCCCGGACCCGGCCTGCATCCTCCCGGCGGGAGAGTGAGTGAAGGCGACCAACTTCCATCGGCCTGAGACTTGGGAGGGGAATTGAGGACAGGACCTGTCCGAAGAGGGAGCGACTTCGGTTGCTTTTCGGTAACGTCCGCCATCAACCCAGCTCACAAAGG # Right flank : CGCACATGGGCCAGGCCGTCCACGAGCGGGGGAGGCCCGCTCCTGCCGATCGCCTGAGTGTTTACTAGGCGGCGACCCCTGCACCCGTGAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGGCGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1918-2069 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000177.1 Nocardiopsis halophila DSM 44494 contig_177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1918 30 100.0 31 .............................. CGATGGCCACCTCGCGCAGGAGGTCGGCCGC 1979 30 100.0 31 .............................. GCCTCGAGACCCGGATGGACACGATCGCCGG 2040 30 93.3 0 ............................TC | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GCGAGCCCCACGCCCGTGGGGATGGACCGG # Left flank : TGGACACCCAGGAGCTGATCGGGTCCGGGTACCGCAAGACGCCGACCCCGACGGCGGGCGGCGAGGGGCGCGCGGACGTGTCGCAGATGCCGCGGGCGGAGCTGGCCTCGCTCATCGAGCAGCTGGACGAGCAGATGCACCAGGCCGCCGCGGACCTGCAGTTCGAGCTGGCGGCGCGCCTGCGCGACGAGATCAAGGAACTCAAGCGCGAGCTGCGCGGCATGGACGCTGCCGGCGTGGAGTGAGCCGAGGCGGCCGCCCTGAGGTCGGCGCGGCCGGGCGTGCGTACGCCTGGTCCGCCGCACTGGGGGCCCGTCTGCTGGATGAATCCGGAAGAGCACCGCGGCGTGGAGGGTGAATCCGATGAACGGCCTGCCCCTGAGGGAGGACGAGGGAGCGGCGCATGCGGAAAGTAGTCAACTGACTACAGGTGCCCCTTGTCGGGGGCTGGTTTTTGACAAAGAAATGGTAACGCCCTGAGTTCTCGCAGGTCGAAAAGT # Right flank : CGTCGACACTGCGCCGCCGCGGTCACCGCAGGGTGAGCGCCCGGTAGAGGGCGACGACGGTGGAGGCGCCCACGATCTCACCGCGGTCGATCATCGCTATCGCTTCGTCCAGGGCGAACCAGGCAACGCGCTGGGCTTCGTTGATGTCAGGGGCGGTGTCGGTATGCACGGGTTCTCGGCCGAGGTAGATGATCTGGGGCTGGTCGATCGAGCCGATGGCGGGCTGGAACGTCACCAGGTGCTCCATGCTGCGGGGGAGCCACCCGGTCTCCTCCTCGACCTCCCGGGCGGCCGCGGCGGCGATGTCCTCGGCGTGGTCGACGTAGCCGCCGGGCAGCTCCCACACCCACCGGTCCACGATGAACCGGTGCCGGTACATCAGCAGCACTTGGCTGCCCTCGTTCATGACCAGGGTCATCGCAGCAGGCGGAAGCTTGGCGACGTACTGGGTGAATTTCACGCCGTCGGGGAGTTCGACGTCGACCGTCGTGAGGCGGATG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCCCGTGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 36615-36363 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000197.1 Nocardiopsis halophila DSM 44494 contig_197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 36614 36 91.7 34 ATN................................. TGGGAGGCCTGGGGGTGGGTGCGCGCGGACGCGC 36544 36 91.7 37 CNN................................. CGCTCTAAGGCATACTCCCAAGCCCACCCCGACCGCG 36471 36 100.0 37 .................................... GACGATCGTGACGCGCGTAGTCTGGCCCGTGTACAGG 36398 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 95.1 36 TGGCGGTCGCCGTCAGCGGCGACCGAGGATCGCAAC # Left flank : CCTCAGCGGCGGCCGAGGATCGCAACCCCTCCCGCGTCCGGCTGAGGGGGCCGGGCGC # Right flank : TCGATGGGGGTGCACGGTGACCTCTTCGCTCCGGGGGGGTCGCTCTCACGGGGGTGCGTGCGGATTACGGGTCGCTCGCGCTATGCGCTGGGTGGGGGAGTGGCTTCAGGTGCTCGGGCGCCGGCTTCCTTCCGTGCACCCTCGTGCACCCCCGCTGAGGGTGTGAATGACGGGATGGAGTCTGCACAGCGGGCGGCCGCGGCGAGGCGGTGCACCCGCGCGTGCACCCTCGGCAGCAGAAAAGCCCTGCCTGTTCGATGTGTCATCGCAGGTCAGGGCCTTCTTTCGAATGGAGCGGATGACGGGAATCGAACCCGCGTTATCAGCTTGGGAAGCTGAAGTTCTACCATTGAACTACATCCGCGTCGGGCTGCCCGGTGGGTGTTCCGTGGCTGCCAACGGGCCTCATCATAGCGGACTCTGGCGGGGAGCGGTAACCGGCGCGGGGCGGTGGCCCGCCGGTGGGGCGGAGCGGGGGGTCGTCGCAGCAGGTAGGTTCT # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCGTCAGCGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6071-5738 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000179.1 Nocardiopsis halophila DSM 44494 contig_179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6070 28 100.0 33 ............................ TGACGGCCGTGGCCAGCGAGATTTCCCAGTCCT 6009 28 100.0 33 ............................ GTCGCGCCGCAGCCGCTCCAGGTCGGGGTCGGG 5948 28 100.0 33 ............................ GGCTTCGGCGACAACGACCCGCAGCACTATTGG 5887 28 100.0 33 ............................ GGCGCTGATCGAGGTGTGCACGGTCAACGTCCT 5826 28 100.0 33 ............................ GACGTCCTCCACTGCGGCCTGGCACCAGGCCTG 5765 28 82.1 0 ..G.........TGT..........G.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 33 GCAAGCTCCGCGCAGGCGGAGATGGACC # Left flank : GCCGGCGGCATCACCACGGTCGTCCTGCTGAGCGGAGCCGCCGCCTGTAACGGCGGCGGCGAAGGCGGCGGTGAGAACTCCGAGCAGGAGGAGATGCAGGAAGAGGGCGAAATGTCCGAGGAGGACGGCGACTCCATGCAGGACGAGGGCATGGAGGGCGAAGACGGCGAGATGCAGGACGAGGAGATGGGCGACGAGGAGATGGGCGACGAGGAGATGCAGGAGGACGGGGAGGAGATGGAGGACGAGGGCTGACGCTCCGTCTTCGCTCCTGCTCCTATTGCGGCATGTGACCCCGCCGGAGCCGTTCGCTTCCGAGAGCGCTGCCACACAGCCCTCGGAAACGCACCTGTTCCGGCGGGGCACAGCGATCTACTGCGGGAGCCCCGTGTCACCCGGTGCTGCGCCCCTCCGTATTCAATGCGGACAGTTCCTGTCCACTAAGAGTGCGCGATTGGTCGCTTTTCGATAACGTCCCACATAAGCCCAGGTCAGTAAGT # Right flank : ATTGCCGACTCTCCGGGTAGTGCTTACTGCTTGGACTCGGCTGAGTTGTCCAGGATCAGGTCCGCATGGTCTCTCGGGGCGTGGCGGGTTGCGAAGGACTCTTCCTGGGTCGCCCACATCTCCCGGTAGGGCCTGTACAGTTCTGCGTCCCACCTCGAGTCGAGGCGCCTTCGTCGCACTTCGGGCGGGGCCTCCACCCACACCAGCAGGGACAGGTACGGGCGCAGCTCCTTCGCTCCGCAGCCGCAGCCCTCGATGACGAGGGTGTCGGCGACCTCGGCTCCGTCCCAGCCGCCCGGGTCGTCGGGGGCCCAGTCCCCGGTCTCCCAGTCCCAGCGGCGCCAGCGCGGGTCGCGTCCCTCGGTCAATGGCTCCATCACCCACCGGCGAACCAGGGGAGCGGCCGCCTCCAGCCCTTCCCACCCCGGGTACAGGTCGTCCATGTGCACGACCGGGCAGCGCAGGCGCGCCGCAAGCGCCTCGGCCAAGGCCGTCTTGCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGCTCCGCGCAGGCGGAGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 349-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000198.1 Nocardiopsis halophila DSM 44494 contig_198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 348 29 78.4 35 --------............................. GTCGTCGGGGGCTTGGTCGTCGGGGCGGTCGGCTT 284 37 100.0 28 ..................................... GTAGTCCTCGGTCGGCTCGGTGTCCCAG 219 37 91.9 34 C.T.N................................ CGCACTCCAGCGCATGCGTGAACGGCGACTTGCC 148 37 81.1 35 CNNNNNN.............................. CCCGTTGCCGTGGCGGATGCACATCCTTTTGTATC 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 90.3 33 GTGGCGGTCGCCCTCAGCGGCGGCCGAGGATCGCAAC # Left flank : | # Right flank : CGTCGACGAGGTGGAGAAGGTCGCCGAGGCGGTGATGTGG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 207-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000200.1 Nocardiopsis halophila DSM 44494 contig_200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 206 32 86.5 36 -----................................ CGCTTCATGCGCCGCATGAGCAGCGGCGACCTGTGG 138 37 86.5 32 GTGGC................................ CAGCTCGCAGATCGCGCGGCTGATGCTGCAGT 69 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 91.0 34 NNNNNGGTCGCCGTCAGCGGCGGCCGAGGATCGCAAC # Left flank : | # Right flank : CGCAGGGCCCAAGTCCCGGCGGCCGGTAGAACG # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNNNNGGTCGCCGTCAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 289-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000199.1 Nocardiopsis halophila DSM 44494 contig_199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 288 37 100.0 35 ..................................... GCGCTGCTGCTGGAGGGCACCACCCCGGCGGCGGG 216 37 100.0 38 ..................................... CTCTCAAGGGATTCGGGGTGCGGGAGCCGCACCGACAG 141 37 100.0 35 ..................................... CTGAAAAATCTGTTGTTGACGAGTGTCACCCGGAG 69 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 36 GTGGCGGTCGCCCTCAGCGGCGGCCGAGGATCGCAAC # Left flank : ATGCCTTCGGTGCAGGCTCGCCTGATGGCGCGCCACCTGCGCGACGAGCTGCCGGGCTATGTTCCTTGGACGGTGTGAATGGAACTGCTCATCACCTACGACGTGGCCACCACGACCCCGGAGGGCGCCCAACGGCTGCGCCGCGTGGCCAAGCTGTGCGAGGGGTTCGGGATGCGGGTGCAGAAGTCGGTCTTCGAGGTCGTGTGCGGCGAGGCGGACCTGGTGCGGCTGAACGACCAGCTGGCGCGCATCATCGACGAGGAAGAGGACAGTATCCGGGTGTACCGGATGAACCGCGGGTCGTTCAAGGCGGTGGCGACGATGGGAAGGGCTCGTGCGCTGCCGCATGATGACGCGCTGGTGCTGTAGTTGGGAACCTCCGGTGCCCATGGAATCCCGGGGAGGTTCTCAATGAGGTTTGCGCCTTTTTGTGGAGGAGAGTCCGGTTCGCGCGTCGGTTTTACCGTCGCGGACCGGGGTGTTTCCCCATTTCAGGCGCC # Right flank : CCACCCCGGTGCCGGTGCTGCGGCTGAAGCCCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9583-10709 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000239.1 Nocardiopsis halophila DSM 44494 contig_239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9583 29 100.0 32 ............................. GGGCGACCGCCGGATTGTTTGGCGACATGGGG 9644 29 100.0 32 ............................. GTCCAGCCTTGTCACCCATGCTAGAAGGCCCT 9705 29 100.0 32 ............................. TTCCGGAGTCCGCACGCAGACACCCAGCCCAG 9766 29 100.0 32 ............................. CCCTGCTGGACGAACAGCTCGCGCCCGAGGCA 9827 29 100.0 32 ............................. CACGTCGGCGGTGTATTCCTGCTGGTCGAGGG 9888 29 100.0 32 ............................. TGCTCTGGTACCTGTCCCTGCTCGGGCTCCGC 9949 29 100.0 32 ............................. GGTGTGGTCTATGGCGTCGAGGATGTCGTCCG 10010 29 100.0 32 ............................. GCGCGACCGCCGGATTGTTTGGCGACATGGGG 10071 29 96.6 32 ......................G...... CACGTCGGCGGTGTATTCCTGCTGGTCGAGGG 10132 29 96.6 32 ......................G...... CACGTCGGCGGTGTATTCCTGCTGGTCGAGGG 10193 29 96.6 32 ......................G...... CACGTCGGCGGTGTATTCCTGCTGGTCGAGGG 10254 29 96.6 32 ......................G...... CACGTCGGCGGTGTATTCCTGCTGGTCGAGGG 10315 29 100.0 32 ............................. CCCGTCGGCGGTGTATTCCTGCTGGTCGAGGG 10376 29 100.0 32 ............................. GTTGTGGTCTATGGCGTCGAGGATGTCGTCCG 10437 29 100.0 32 ............................. GCGACGAGCGCATTGTCGGTGTGAGGACTGCC 10498 29 100.0 32 ............................. TCCCACACGCACCTGATGTACATCGAGCGCAA 10559 29 100.0 32 ............................. TAGGTCTGCGCGGCGGCGATCTCGCCCTTGCG 10620 29 100.0 32 ............................. NAGGCTTCCGATGCTGCGCCCCGGGGTCCGGG 10681 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TGCTGGAGTACACCGGCCTGCGCCCGCTTGTCGACCTCGACCTGCGCTTGGGCGAGGGGTCCGGGGCGCTGCTGGCCCTGCCCCTGCTCCAGGCCTCCGCGCGGGCCCTCCGAGACGTGGCGACCTTCGAGGACGCCGGCGTCACCGAGCGCTGAGGAACCGCCCCACGACTGCCGGACAGCCCTGCCGGGGCCGCACGAGCGGCCCCGGCAGGCGTCGTACACGGCCTCCGGCCGTCCCGCCCGCGCGGCCTGGAACGTGGCCGGGCAGGTGCACATGCACGCCGACACCGTCACCGACTCGATGCGGCCGGATTCATCTGGATGAATCTGGAAGTGCACCGCGGCATGGAGGATGATTCCGGTGAATGGCCTGTTCTTGAGGCATGGCGGAGGAGCGGTGAATGCAGGCGGTAGTCAATTGACTACGCAATCCCCTGTCGAGGGGGCGGTTTCCGGTAAAGAAATGGTAACGCCTTGAGTCGTCGCAGGTGGACAAGT # Right flank : CGTCAACACCATGGCGGACGACATGAGGAGCGGCGAGCCCCACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : GCGAGCCCCACGCACGTGGGGAGGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 29-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000240.1 Nocardiopsis halophila DSM 44494 contig_240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 ............................. AAGCCGACAGTCGGGCCCGCCAGGCCGGGGCG 90 29 96.6 32 ....................A........ AAGAGGAGGCCGCACCACGAGACGGACTGGTA 151 29 100.0 32 ............................. TCGGCGGTGGGCAGCAGCGGCTCCTGGCGGCG 212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : AGGGCGGCGCCCAAGGGGTCGCTGTCGGG # Right flank : GCGGGTCGTGTGCCTGTGGTTGGGATGCCATCGTCCCTGGTCCTGAGGGGTGGGCGAGGGGATCGCTGGGGCTCCGTGCGGTCGGCGGCGTGTTCCGGAGCCTCGTTCCTGCTCGCCGGTGTGATGTCCCCCCGCGAGGAAGGAGTGTCCCGAGAGGTGTATATACAGTGAGGCAGGGCATGGGACGCGTCGAATCGGTCGGAAACGTGAACCCGGAACCGGTTTGGCACGGTATTTTCGGGACACTGACGCAGGGCGTCCTCCGGTGAGCGCCTCCTCGGCCGCCACCGCCGGTGCGCCGTGCGCCCGACCGGCGCGGCAGGCGCCCGCCCGCCGCGGTCCCGCGACGACGGATCTGGAGGGCTTCCTCGGTGACGTATCTGCTCGGTTTGCGCATGGAAGGGCGGACGGCGCTCGTCGTCGGCGGCGGGCGGGTCGCCCAGCGCCGCGTGCCGGTGCTCCTGGAGGCCGGCGCCGAGGTGGTGCTCGTCGCCCCTGAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 3893-4225 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAD01000261.1 Nocardiopsis halophila DSM 44494 contig_261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3893 28 100.0 33 ............................ GTGGGCAGGTCGTTGCCTATGTAGCGGCACAGG 3954 28 100.0 33 ............................ GATGGAGACTGACCACGTTCCTACACAGCACGC 4015 28 100.0 33 ............................ GGTTGGGGTCACCCCAATAGGCGATGAGGCGGT 4076 28 100.0 33 ............................ TGCCCCTGTACACGAGGTTTCGGGGGGTCCGCG 4137 28 100.0 33 ............................ ACGAGAACGGCTGGGCGGGGATCGGATACAACT 4198 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTGAGCTCCGCGCAAGCGGAGATGGACC # Left flank : GCATCGAGGACGGGACCCTGGAGGCGCGGCCGCAGAGCGCGGACGGGGTCTCGATCGCGCCGAAGCTGAACCCGGAGGACGCCGAGGTCGAATTCACGGCACCGGCGATGCGGGTCGACCGCCTGGTCCGGGCGTGCACACCGGCGCCGGGAGCGTGGACGACGTTCCGGGGGGCGCGGCTGAAGCTGGGGCCGGTGTCCCCGGTGACGGACCTGAAGGCGGGCCACGAGCTGGCGCCGGGCGAGCTGGCGGTGGAGAAGAAGCAGGTCCTCGTGGGCACGGCGACGCACCCGGTCCGGCTGGGCGAGGTGCAGCCCCAGGGCAAGAAGATGATGAACGCCGTGGACTGGGCCAGGGGAGTCCGCCCAGAGGAGGGCGAGCGCCTGGGCCAGTGAGGGAGTGTCGGCTGGCGAGAGGCGATGAGGACGGAAACGGTCCGCGTGCATCGCCTCGGCCATCACGTTACGGTAACGGCGCCATGGCGGTGCAGGTCAAGAAGT # Right flank : CGTCGTCCAGCTCATAGACGAGACGCCTGGCGCGTCCAGCCGCCCACCGCTGCCACAACCTGCTCGGCCCCCGGGCTTCACACCCGCTGACCGACCACTGCGTCGGCGCTCTCTCGCCACTCCGGGCCGATGCGGGTGCCGTGTTCCATCTGCAGGTCGGTGTGCGCGGTCAGGGTGTCGAAAGGCCGGCGGATTCGGTGGGCGGCGTACCCGCCCGAGCCTGCTCGCCCCCACACTTCACGCGTCCGCCCCCGTTACAGCGGTGGTGGCGTTGTCGATCAGCGCCGGATGGTGCTCGGGGCCGCGCCTCCGTGGTGTCCCGATTCCGGAGTCCACGCCTGCACAACGCCTACTGAATGCGAAATACGAGAGTAGTCGAGACGCGTCACCCCTACCCCGGTTGTCTCGCTGACCAGCAACGGCCACGTCTTCTCGAACCCGCAGCTCCGGACGCCCTGGCGGGATACCGTCCCACCACGCCAAACCCCCAGGAGGCCCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTCCGCGCAAGCGGAGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //