Array 1 68808-70355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNFA01000003.1 Listeria booriae strain FSL A5-0281 contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68808 30 100.0 37 .............................. AGAAGAAACAATGAAAAAAGCTTCTGATGATTTATCA 68875 30 100.0 38 .............................. TGGGAAAAGTAACGGATGAACAATTAGCGCTGTTATGT 68943 30 100.0 36 .............................. CAATTTGAACCAGGTCTTTATCTTCTCTATCGAAAT 69009 30 100.0 36 .............................. AGTAAAACAGGATTCAATCCTAATAAACTCAATCCA 69075 30 100.0 37 .............................. AAGCTCCAGTGCTAGTTAGGTATGTACGGATTGACAG 69142 30 100.0 36 .............................. TGAAATTAATGCGTATCTTGAACAAAATGGGAGCTT 69208 30 100.0 35 .............................. TCTATTGTTCAGCGTGGATATATCTTTATAGCCAC 69273 30 100.0 35 .............................. ATATCTAAAATGGATAAGTTGCTTCTCTTCATCGT 69338 30 100.0 36 .............................. TTTGATGCATCGGAAACATACTTAAGCCAAGTTGAA 69404 30 100.0 36 .............................. GTTATTATAATGCGAACGTTCGTTCTAAACCTCTCA 69470 30 100.0 36 .............................. GCTTCACCTTGTCGCGGTTCTTCCGTCCGAATTTAC 69536 30 100.0 36 .............................. AATGAAGACACATTGAAAGAGCTTTATAAAGGTGCT 69602 30 100.0 35 .............................. AAATCTGAAAACAAAAATTACGAATTAGGAACAAG 69667 30 100.0 38 .............................. CCGCTTTATGTCTTCCAACTTTTCATAATCCAAGATGG 69735 30 100.0 37 .............................. AAATATGGCGGTTTGAAATAGAAACCGATGCCGTCAA 69802 30 100.0 36 .............................. AGGGACATACCTGTTATAGCACCAACGCTATTCACC 69868 30 100.0 35 .............................. TTGGATATGAGTTAGGAGGAATTTACATGATAGGG 69933 30 100.0 36 .............................. GCGTTTACGGCGCTACAAGAGCAAAAAATAAACAAT 69999 30 96.7 37 ....................A......... TTTCAAATGTGGTACACCTGTTGGATTGACAGTCGCA 70066 30 93.3 36 ................A...A......... CGATTAAATGATTGTGTATGACCTAAAAACTTGATC 70132 30 96.7 34 ....................A......... ATGAAGAAAGCAGATAGCAGGCCTTCCGTTTGCG 70196 30 100.0 36 .............................. AAAAAAAGAAGAGTCAATTGCTCTTCTAGGTTTTGC 70262 30 96.7 34 ...............T.............. TTCTCTTTTTATAGCTGCCCTAATTGTCATCAAA 70326 30 83.3 0 ....................G..CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.6 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAGATCCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTGTGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGGCTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCTGAAAAAACGGATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 73603-74358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNFA01000003.1 Listeria booriae strain FSL A5-0281 contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 73603 30 100.0 35 .............................. ACACGACGTGAATACATCTCAAATTATACAGCTAG 73668 30 100.0 36 .............................. TATGGAGAGGGAGATTATAAGATTGCTTTTCGTGCG 73734 30 100.0 38 .............................. CAGGGTGAAGTGCTTACTTTTGTTACAGGTCGTTACGA 73802 30 100.0 36 .............................. AAGGTAAAATCTCCGCAATGATAAACGACGTCATCG 73868 30 100.0 34 .............................. TTCGAATTAATGACGCTGGTAAACCGTACTCTGA 73932 30 100.0 37 .............................. ATCGTGTTTAAACACTTCAAAGTCATAAAATATCATC 73999 30 100.0 35 .............................. ATTTGCTGGATGGATGATGGTTGATTATCTAGGTC 74064 30 100.0 36 .............................. CAACGAATACTAAAAAGTGAATCATTGTTAGCCCTT 74130 30 100.0 37 .............................. TAACCACCTCCTCCAACTTCTGCGCGTTGAGGATTTA 74197 30 100.0 36 .............................. ATAAACGGGCTGACATTTTTAGCAGTGTTAAATTCA 74263 30 96.7 36 .............C................ GATTACGATGCATCAAATCATGTTATTGCCAGTATT 74329 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCATCTTGATGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCATTGCAACATGAAATGAGCAGTTTTGAAGTGTTGGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATAATTGTGCAAAACGGGAAGAAAAATATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGAGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAATATCCATTTTTCAGTATTAATGGATATTAACCCTCTTAATCTATTGGCCTATCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAGGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGGCCGTTTTCGCGTAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTTACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGCGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 165394-166274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNFA01000024.1 Listeria booriae strain FSL A5-0281 contig000024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 165394 30 100.0 34 .............................. GGCTATCAAGAAGACGGGAACCATCCCGAAAAAA 165458 30 100.0 35 .............................. CCAATCATTGGACAACTCCTAACACTTGCATCTTA 165523 30 100.0 34 .............................. TTCTACGCATATTGTCATTTAGCATCATTGCAAA 165587 30 100.0 36 .............................. TGGAGTTGCTGTATGATGCTGAAGGCGATGCCATAC 165653 30 100.0 36 .............................. ATCGAAAGATTGTAATTCAGCTAACGTTAGAAACGA 165719 30 100.0 36 .............................. TAAGAAAATAAAGTACACAAGTGTAAATGTGTACTT 165785 30 100.0 37 .............................. GTTTCTGGATTGATTCCTAAATACATTTTGAATAACC 165852 30 100.0 34 .............................. CAATTACAATCGTTCCACATGCGGTACCTATCGC 165916 30 100.0 35 .............................. CGTCATTACAAAAAGCCGTCAATTCAAGTCGAAAA 165981 30 100.0 36 .............................. ATTGCTTCGCCGGTCTTGCTTTCAAGTGCAATTTTA 166047 30 100.0 36 .............................. AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 166113 30 96.7 36 .............C................ TTTTCAAATGTTGCTTGAGTGCCTAGCTTCGGATTA 166179 30 93.3 35 ........T........A............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG T [166195] 166245 30 76.7 0 .................A....TCCAG.C. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 97.6 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGATGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGGCTATTTTTGGAGGTTGGGTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCAATCAACAATCCATAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGATCTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGGGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 101542-100538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNFA01000025.1 Listeria booriae strain FSL A5-0281 contig000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 101541 30 100.0 34 .............................. ATTGTTAGCATATCTTGTTTTAATTCAAATAAAG 101477 30 100.0 36 .............................. CAGGATAAAATTGCGGGGGATGAAGAACTCAAAATA 101411 30 100.0 36 .............................. TACTGTAAAAGTAACACTAGGTAAAGTTAGTACCTC 101345 30 100.0 36 .............................. TCGTCTGAACCTATCATTTAAGCGTCATATAACAAG 101279 30 100.0 35 .............................. CGTTGTAACCATGCCAATAACTCATAAATATCATT 101214 30 100.0 36 .............................. ATGCTCCAATACTTCTTTTCTAGCAAACTGGAAGCC 101148 30 100.0 35 .............................. CCACGCTTTCATTTCAGCGCCGCAGCTGGGGCAGA 101083 30 100.0 35 .............................. ACTTCAAATTTAGGCTTAACGGTATAATTACCCAT 101018 30 100.0 35 .............................. TCCTCATATAGGACAAGGCCCCCGACGGTACTACC 100953 30 100.0 35 .............................. CAAGGCGCTATCGTCAATTATATGGGCGCAGGGAA 100888 30 100.0 36 .............................. TTTTACGCGATGTTCTGCTAGCTCGTCCTTAACTTC 100822 30 100.0 36 .............................. ACAAGTGTTGCTGGATTAGTCTTTTGCTATCCCGTT 100756 30 96.7 36 ....C......................... TTCGTTCATCGCTCGAGCAATGTTTTCATGGTATAC 100690 30 100.0 35 .............................. TGCCAAGATCGCCAATTTTTGATTTTGTGTTATTA A [100676] 100624 30 90.0 27 .............C...A......C..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [100568] 100567 30 73.3 0 .C....CC.A.....C.A.....CA..... | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 97.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTACGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCCATTTAGCTACGACTGCTTTGGCAGACAATCTCTCGGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCTAGCGCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAATGAAGTAGCCTCTCGTTGCAACAATTCCTGTGCTGCTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //