Array 1 39236-38230 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDB01000069.1 Escherichia coli strain NS-NP036 sequence069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39235 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 39174 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 39113 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 39052 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 38991 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 38930 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 38869 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 38808 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 38747 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 38685 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 38624 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38563 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38502 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38441 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38380 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38319 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38258 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65579-64939 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDB01000069.1 Escherichia coli strain NS-NP036 sequence069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65578 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 65516 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 65455 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 65394 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 65333 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 65272 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 65211 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 65150 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 65089 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65028 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 64967 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //