Array 1 98969-103016 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070250.1 Streptomyces californicus strain FDAARGOS_1211 plasmid unnamed1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 98969 37 100.0 37 ..................................... GCCGACGGCACCACCGCCCAACTCCGCTACTCACTGG 99043 37 100.0 34 ..................................... ACCGCCCGGGCGGGCGCCGAGCTGGCGGTCATCG 99114 37 100.0 36 ..................................... GCGTCGGCCGTCCGGGCGCACGGCACGAACACGCTC 99187 37 100.0 35 ..................................... GGCCCGCTCCAGCAGTCGGGGGTGGGGCGGCGGCG 99259 37 100.0 35 ..................................... CTCGCGGTCGCCCTGGCGGCCGTCGCCGTGGGCGT 99331 37 100.0 37 ..................................... GCGTCCCGCACCGCCCGGCAGGTCCGTGCCGACGGGC 99405 37 100.0 35 ..................................... GCCACGTCGAGCTGTCGGCGGCCCGTACGGGTCAT 99477 37 100.0 35 ..................................... GTACTGTCCAGGGTGCCCCAGCCGCACAGCGGAGG 99549 37 100.0 34 ..................................... TGCGCGGTGGCGGTGCTGATCCCGTACTGCGCCG 99620 37 100.0 36 ..................................... CACCCGTCGGTGAGGACCGCGACCAGGCCGTGCCGC 99693 37 100.0 35 ..................................... GGCAGGGGAGAGAGCCGGCGGCGAGGTTTCCGGTG 99765 37 100.0 37 ..................................... TGTGCCCACTGGACGGTGATGCTGCCGGTGGCCCCGG 99839 37 100.0 37 ..................................... CCCGCCCCCGGGCAGGTGGCCGCCGCCTACGCGGGCG 99913 37 100.0 34 ..................................... GCCGCTCGCTGGGACGCTGAGGCCGACCGGCGGC 99984 37 100.0 36 ..................................... CTCCGTGACCGCCTCGACGAAGACGAGCAGGCGGCC 100057 37 100.0 36 ..................................... TTCGCATCTTCCCGTTTGGCTTGTGCAAGCGAAGTC 100130 37 100.0 37 ..................................... ATCGAGGATGACCCACAGGTGGAGGGCCGGGGTCCGG 100204 37 100.0 34 ..................................... ACCGTCGACGGCCGAACCGGCCGCAGCCGGCCTC 100275 37 100.0 35 ..................................... AACGTGCTCGTCCTCGCCCTGCTCCTCAGGGGCGC 100347 37 100.0 37 ..................................... ATCGTCGCGGGCGAGCTGCTGATGCTCCGGGCGGGGC 100421 37 100.0 35 ..................................... TCGTATACGAGCTGCTGGTCGACGAGCATGGTGCG 100493 37 100.0 36 ..................................... ACGAGCACCGGCCACACGACCGTCCGCGGCTGCGGC 100566 37 100.0 36 ..................................... CTCGGGGGTGGCGGCGCGCGCGTACCGGAAGGGGAC 100639 37 100.0 36 ..................................... GCGTTGGGGTAGAGCTGGCGGAACTCGCGGGTCCAC 100712 37 100.0 35 ..................................... CCGTTGTCGCATGCGTACTCGGCGCCGGGCGGGAT 100784 37 100.0 35 ..................................... CGGTGCAGGTGCAGGCTTCGAAGATCAAGCGGCAG 100856 37 100.0 36 ..................................... ACCACTGCCGCCATGGAGGCCACGGGCGACACGGCG 100929 37 100.0 36 ..................................... TCTCCACGATGGCGACCCCGGCTGGAGGCACCCGAT 101002 37 100.0 36 ..................................... ATCCGCGCCCTCAACCCCAAGCGCGGGCAGGGCACC 101075 37 100.0 35 ..................................... TTCGGCCCTCCGAGTCACACCAGCCACTCGACGCG 101147 37 100.0 35 ..................................... CCGGTCCCTTCACCACCGCGTACCGCGAGCGTGAG 101219 37 100.0 32 ..................................... CCGGAGCGGGGATGAGGTGCTCAATGGCCATG 101288 37 100.0 36 ..................................... CCGGTCTCGTCCGGCGCGGCGTTGACCGGCTGCCGG 101361 37 100.0 36 ..................................... CACCGCTCCGACCTGCACAGACACCTAAAACGCAGA 101434 37 100.0 35 ..................................... CTGCCAACCGCGACGTGGCAGGAACGGGCCAACCC 101506 37 100.0 34 ..................................... TGGGCAGCCGGCAAGGCACTCCAGATCATCCGGG 101577 37 100.0 35 ..................................... CGCATCGTGTCCACGATCGCCGGGCAGCCCGCCTA 101649 37 100.0 35 ..................................... TCCTCGACAGCCGGGACGCGGGCCTGTGGGCCACC 101721 37 100.0 33 ..................................... GGGCGTCCGCTCGGGTACTGCCCGCTGGCTGGT 101791 37 100.0 36 ..................................... CCAATGCCGAGGAGCGGAGACGCCCCATGCCCTCAT 101864 37 100.0 35 ..................................... AGCACGCCCGGGGCGTTGATCGCTCGGACGAGGCT 101936 37 100.0 35 ..................................... TTCACGGTCCACTCGCCGTCGAGGCGGATCTCGCA 102008 37 100.0 37 ..................................... GACGGTCACCTCCTGGTCGTCGTAGGCGGGTGCGGCC 102082 36 91.9 37 .................G..-....C........... AAGGGACGCCTGCGCGCCTGGAAGAAGGACTGGGCCA 102155 37 97.3 69 .................G................... ATGGTCGAGGCGTGCAGGTCCACCACAGCGATCAACCGTCTCCGTCAGGAGACCGGCGGCGTGCGCCTC 102261 37 97.3 36 .................G................... CGTTCAGTGACGCGGTGGGTGTGCGGGGGAGGCGGT 102334 37 89.2 36 ............T...AC..C................ TCCTCGTCCACCCGGGCCACCGTCGCCTGCAGCACC 102407 37 86.5 35 ............T...AC..C.........C...... TTCAGCCAGTCCGGGCCTCGGCCGCAGAGCTGCGC 102479 37 83.8 37 ............T...ACA.CA............... CCGTGGATCAGCACCCGCCCCGACCCCGTCCCGAGGC 102553 37 89.2 34 ............T...AC..C................ ACGAGGTAGCGGGCGATGTAGGTGGCGCCCTTGG 102624 36 81.1 35 .C..........T..A..-.C.A........G..... ATCAAGCAGTGCAGGCCTGACCACGTGTACGAGGA A [102638] 102696 37 89.2 32 ..........T....T.G....A.............. GGCAAGGCCGGCTACGGCAAGACCGAGATGGG 102765 36 91.9 36 .................-.AC................ GACGAGGTGGTCACCAGGATTCGTCACCACCTGGTT T [102780] 102838 36 78.4 35 ....T.....TT...A.-.AA.A.............. TTGCGCTCGCGGGGGGCTGTGGCCTGGTCGGTGAG 102909 36 86.5 35 .....A..T.T......-..G................ AGTCCAAGGGACAGGCTGTAGAGAGCATCCGCGTT 102980 37 73.0 0 ...........TT...AG..C.A..A........GGG | ========== ====== ====== ====== ===================================== ===================================================================== ================== 56 37 97.1 36 GTGGCGGTCGCCCTCCGAGGTGGCCGAGGATCGCAAC # Left flank : GCTCGCCATAGCCGATGTGCCCCGGAGCCTGGCTTCCTCCAGGAACGCCAGCGGAGCCCTTCTGCGTTTGCAGCCGACAAGGCAGAGGGCTGGTCAGCCTGCGAGCGTCCGTTCTACCTCTCCCGGGACAGGGCGTAGGCTGTGGGTTTCCGGCCGCTGGATGGCTTCACTGCCCACGCCCTGCTCCGAGCCACGACCGGAGCCCTGGCCGTGATGGCGTCGGAGGTCTGGTCGCATTGAAGCCGAAGTTGATGTCGTAGCCTCTCCGGCGATCAGGTGCTTGCCGCCAACACTGCGCTGCGGACCGGAACCGGAGGCTCCGACGTTTGCCGCGAAATCCCCCTCGGATGTGGCTGTAACCTCCAGACTGCTTCGGAACCGGAAGAACACACGCGACACGCGGACCACACCGAAGCTAGATGCCCGAATCGACCAGAACTGTCACCTCCAGCAGGCTCCCTATACGAAGAGCGCTACGCTCTTTGCACTGTTCAGTCAGG # Right flank : GCTCTCGACTTCGGACTGTAGCTGCAGCCCGAAGTCGAGGCGGTCGGCCTATGGGACTGCCGAGGGGCCGTGCGCTGAGCTTGATCCGGTGTCAGTGACGGCCGTTACGGTCCGTGCCAGATGCAGAGTTCCAGCGGTGTTGTGGAGGGGGAGTGATGGCTGGCGGCGAGCAGCGGCTGTATGCGCACAGTCCGGGCGGTGCGTCGGGGGTGTGGCATTCGCTGGAGGAGCATTTGCGTGGTGCGGCGGCCTTAGCGGGTCGGTTTGGGGGTGTGTTCGGAGCTAGTCAGTTGGCCGAGTACCTGGCGTTGGTGCATGACGTGGGTAAGGGGTCGTGTGCGTGGCAGGACAGGCTGAGGGCTGTCGGTGTCTCGGGGGGGAGGGTGGGGGTTCCGCATAAGCACGCGGGCGCTGTGCTGACGGAGCAATATGTTCGACCGGCCGTGTGTGCAGCGGTGGTGTTCGGACATCACGGCGGTCTGCCGGACATGGAGCGGCTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGAGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-71] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 112525-113140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070250.1 Streptomyces californicus strain FDAARGOS_1211 plasmid unnamed1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 112525 37 100.0 35 ..................................... CAGTTCCTGGACCGGCTGTGGGCGATCGAGCACGA 112597 37 100.0 36 ..................................... TTCCCCCGCAGCAGCAGCACGGTGGGAGGCCAGCGG 112670 37 100.0 35 ..................................... GTCGTCCGGTCGAGCGTGCTGTCGTGGAGGCAGAC 112742 37 100.0 35 ..................................... CACCGCCCCACGCTCGTCGCAGTCGCCCGGGGGAG 112814 37 100.0 34 ..................................... CTCGCGTGGGTCCGGGCCAACCGGCCGTCCGAGG 112885 37 100.0 37 ..................................... ACCCAGCACGAACGCCGCGGACCCGGTGACGGACGCA 112959 37 100.0 35 ..................................... CACTGCTGGAGGTCGACCTCGATCGTTGCCGAGTC 113031 37 100.0 36 ..................................... TTTCCGCCGCAGTACGTGCCCGCCGGGGAGAAGCGG 113104 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 36 GTGGCGGTCGCCCTCGCGGGTGACCGAGGATCGCAAC # Left flank : AACTGCCGGGCTACCTCCCGTGGACGGTCACTTGATGGACCTGCTGCTGGCCTACGACGTCGACACCACCACTCCGGCGGGCAGACGGCGACTTCGCCGCGTCGCCAAGACCTGCGAAGGGCACGGCTTACGCGTTCAAAAGTCTGTCTTCGAGATCGTCGCCGACGACAAGACGGTTCTCCGGCTCCTCCACGACCTCGAGCAGATCATCGACACGGCTACCGACAGCATCCGCCTCTACCGACTGCCACCCGACGGCTTCAACCATGTCCAAACACTAGGCACCGCCCAGGTACAGCCTCACCGTGAAGACCTCGTGCTCTGACAAGCAAGCCGACCGTCCTCAAATCGCCCCAGACCTTCTATCTGCTTCGGAACCGGAAGCACACAGGCGACACGGGAATCGCACCGAGGCCAAATGGGCGAATTCGCCAGAAATGTCACCGGTAGCCCGGTACCCGCTCAACGAGCACTATGCTCTTGACGCAGGTCAAGCAAGG # Right flank : CGCCCTGACCCGGGGCGACTACCGCGGTGTCATCGCGGGTGGCGGCGATTGCGGCGGGAGCTGTAAACCCTGTCACCGCTGACGTGCTCGGGCCTTGTCCGGGGCCGCCCGACCAGTGAGCGAGGAACCCTGACCCGGTCCAAGACCTCGATCATCTGCGGGGCATCACCCCACTGACCTGGAGTGATCAGTAGAGCCATGGGCCGGCCGCCGCCTTCACCAGCGAGGTGAATCTTGGAAGTCAGACCGCCCCGGGACCGTCCGAGGCCCTCATCGGGGCGGTGGTGCCGGGGCGTCGTCCTTCTTTCGGGACCCGCGGCCTGGCCTTGCGGGCGCCGGCCTCATGCTGGTGGGCCCGGCAGGACGTGGAGTCGACGCCGACCATGCCCCAGTCGACCCGCCCTGCAAGGTCGGCGTCTGCCTGGACCGCCTGCAGGAGGCGGTCCCAGGTACCGTCCGCCGACCAGCGGCGATGCCGTTCATAGCCGGTCTTCCACGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCGCGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.60,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3381213-3381730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070249.1 Streptomyces californicus strain FDAARGOS_1211 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3381213 30 100.0 31 .............................. CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 3381274 30 93.3 31 ...A.........................G GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 3381335 30 93.3 31 ...A.........................G CCATCAGCGGCACCCACGCGGGGCGCTGAGT 3381396 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 3381457 30 96.7 31 .............................G GCTGGCACCCGCACATCCACGCCATCGTCCT 3381518 30 96.7 31 .............................T CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 3381579 30 100.0 31 .............................. GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 3381640 30 93.3 31 .....................A......T. CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 3381701 30 86.7 0 ...........A...........AA....T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : TGCTCCAGGTCCGGGCCGGGGAACAGGAGGTCGTGGTCCCCGCACGCGGGTTCCCCGCCACAGCGGAAGGCCGCAGGCAGGGCAGTCCCCGCCGTACGCGGCGGAGACCGCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTGCCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACGTCGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3405679-3405952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070249.1 Streptomyces californicus strain FDAARGOS_1211 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3405679 30 93.3 31 .......T................T..... GGTGCGGGGCGGTGCCCGGGTGGTCGACGTA 3405740 30 93.3 31 ........................T....C CCGCCGCAGGAGCAGCCGCCGTGGGCGTGGC 3405801 30 96.7 31 ............................T. CCCCGGTCGCCCACCGCCGGTGAGGCTTCTG 3405862 30 100.0 31 .............................. GCCTCGCCGCCGTGATCGAGCAGGTGGTCGT 3405923 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGGCAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCACCGGACACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGACCCAGATAGGACCGGCAGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGCTATGCCGATTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCAAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTCCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3898824-3899036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070249.1 Streptomyces californicus strain FDAARGOS_1211 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3898824 30 100.0 31 .............................. GTAAGATCACCATCCGGAATGCGGCGAACGT 3898885 30 96.7 31 .............................C TACCCGCAACTTCCGGGCGGTGGGCGGCTGT 3898946 30 100.0 31 .............................. TGGAGTGCCTGGTCTGGGACATGGACGTCAA 3899007 30 90.0 0 .........................CA..T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 ACGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTGTGCTGATCACGACGATCGGCACGGTGCTCGGCACCTGGCTGGGCCGGACGAAGACCACGGTGCAGGAGATCCCGGCGGAGGGGATGGACCCGGCGCCCGCGCAGCCCGAGGGCACGTGGACGGTGTCGCCCGAGATGTACCGCTGGTTCCAGGACCAGATGGCGTCGATGCACGCCCGCATCAGGACCCTGGAGGACGCGGAGGCCGAGGCCCGGACCCGGGCGGACAGGACGGACCGGCTGCTCGGCCTGGCACTCGACCACATCAGTCAGCAGGACTCGCGCCTGACCGCCGCCGGCATGCCGCTCGTCCCCATGGACCCCGAGCTCGTCGCCGCCCGCGACGCCCGATGAAACGCCCCCGCCCCGGCTTCGGCCGGCGGCGGGGGCGTCTTCGTACATTCCGGGGCCGTGGCGCAGGATCCACCGGCTAGCATCACGTGAGACAAACTTGCCGATTCTCGTGCTGGTGGCAGAAAAAGTCGCAGGTCACGAACT # Right flank : TTCAGACTTTCCGCAGGGGCGGAACAGTACGACTTCCCACTCTGCCGAGTGAAGCGCGCCAGAATAAACAGCGCCATGGGCCCGTAGGCCGATAGCAAGACTCCGTGATCACCAAGACCATGCGGGGCCTCGCCGCCGCCACTCTCGCCATCCTGCCCCTACTCTCCGCCACCCCCGCACAGGCAGTCCAAGCCCTTCCTCTGGCCGATGCCATCCAGGAGCTCCCGCTTGCCGTTGAGTCCCGCGAGGGCTACCAGCGCACGTCGTTCAAGCACTGGGTGGATGAGGACCGGGACGGCTGCTCCACCCGGGCGGAGGTGCTGATCGCGGAGTCCCGCGTGCCGGCCACGGTGGAGCCACGCTGCAAGGTGCTGGCGGGTCAGTGGTACAGCTACTACGACGGAGTCACTCTTGAAGCTCCGGGCGGCCTTGACATCGACCACGTAGTCCCGCTGGCCGAGGCTTGGGACTCCGGGGCCTCTGGCTGGACGGCGGCCCGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4632990-4632656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070249.1 Streptomyces californicus strain FDAARGOS_1211 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4632989 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 4632928 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 4632867 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 4632806 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 4632745 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 4632684 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : AAATCCCACCCCACATCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4637604-4637392 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070249.1 Streptomyces californicus strain FDAARGOS_1211 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4637603 29 96.6 32 .......G..................... GTGCCGATGGGGTCGAAGGGGCTGTGCATGAA 4637542 29 100.0 32 ............................. GGAGTCCTCCGCCTCTACCGGCACATCACCAC 4637481 29 100.0 32 ............................. CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 4637420 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCGCGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAAACAGGTCGATTCACCCCGAAGGTCCTGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : TCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4641017-4640680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070249.1 Streptomyces californicus strain FDAARGOS_1211 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4641016 29 96.6 32 .........A................... GGCTACCAGGCCTGGCCGAAGTACACGAAGTA 4640955 29 89.7 32 .C......................AC... CAGCCAGGGAACGCGTACCTCAGCGCGAGCGG 4640894 29 96.6 32 ............................T CCTCGGCTGCCTCCTCCGCGCCGTGTTCCTCC 4640833 29 100.0 32 ............................. CCGGCTGGGTCGACGTGAACGTTCCCGGGTGG GGG [4640812] 4640769 29 100.0 32 ............................. CCATCGGCGGCCGCCCTGCGGAATGGGTCAAG 4640708 29 89.7 0 .............A..........CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGAGGGGCTGCCGGCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAGACCCGCAGGCCACGAAGG # Right flank : CGGGCCACCCTGGCCGGGCTACGCCGCCCAGTGCTCGCCGCGCGCGGGGACGGCCCCTTCTCCGGCGGGATGAGCCGGGGGCGCAGGGTGCGCCCTGCGGGCCGGAATCACCTGGGCCGTGGCACCCCCGCCTCAGCCCAACCGGAGTGTCGGGCTGAGGCGCGTGCTGCGGTCAGTGGCCGCATATGTTGCAGGGGTAGGCGGTCTGGCTGATGCAGTTGCCGTGATCGTCGTAGATGTAGATCACGGACCTCTGTCCAGGACAGCCGGGGGTGCTAGTGCACCCGATGGCCTGGTCTTCTTGGTGCCCCATGGTGATACCTCGCCTTCTGCTCGGAGGTGGGTTCCCACGTCCTCCGGCAACCAGCGCAGAACCAGAACCACCGAAGCGGGCGGCTCGGTGCAGTGCGGCTGGTGTCTCGCCAGAGCGCCCGGCCGTCCGGGCAGTGGGGGCAGAGCGGCGGCTGGTCCACGGCGTCCTCCTGGAGCAGTTTCGAGTC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //