Array 1 126132-124883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHO010000002.1 Escherichia coli strain PY9F04 NODE_2_length_237269_cov_51.187440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126131 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 126070 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 126009 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125948 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125887 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 125826 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 125765 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 125704 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 125643 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125582 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125521 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 125460 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 125399 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 125338 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 125277 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 125216 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 125155 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 125094 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 125033 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124972 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124911 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153034-151681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHO010000002.1 Escherichia coli strain PY9F04 NODE_2_length_237269_cov_51.187440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 153033 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 152972 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 152911 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 152850 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 152789 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 152728 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 152667 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 152606 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 152545 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 152484 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 152423 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [152397] Deletion [152383] 152381 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 152320 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 152259 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 152198 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 152137 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 152076 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 152015 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 151954 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 151893 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 151831 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 151770 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 151709 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //