Array 1 560-326 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZV01000002.1 Streptococcus halichoeri strain CCUG67100 NODE_2_length_276827_cov_99.956874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 559 36 100.0 30 .................................... GATAATTTTTCACATTCAGGAAATGAAAGC 493 36 100.0 30 .................................... GTCGTTCATAAGAGTATGTGACTTTGCCGT 427 36 97.2 30 ...............A.................... CTTTAATAGGCAAGTTAGGAACAGTCTTTG 361 36 83.3 0 ...............A.............TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGAGCTATGTGGTTTTGAATGGTCCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAATGATGTGATAGGTAAAGGGGAAATGAATGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGTTGAAAAGCAGCACAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAAGAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGCAAGAGGGGAAAGACCTTTGAGAACTGAATAAGACGAACCAAAAAGTGAAGAGGGGTTTATAAGCAGTATAGACTCCGTCAAAGCAAGAATAAATCTGTCAGCGGACAGCAAAGAACGAGTAAGTTCAAACTAAATG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTGGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 540-108 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZV01000003.1 Streptococcus halichoeri strain CCUG67100 NODE_3_length_227656_cov_95.327624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 539 36 100.0 30 .................................... TTAGGCTTCGTAAAGTCGGCAGCGCCCTTT 473 36 100.0 30 .................................... AAAATCTCTAAAGGTTTTGCTTGATGTCCA 407 36 100.0 30 .................................... AGTAAATAAAGACAAGTATCGGCTCCCACC 341 36 100.0 30 .................................... GTATTAAGTAGAGATTTATGCATTTCTTGG 275 36 100.0 30 .................................... GTTGGATAGAGCAGGAGACTTCTAATCTCA 209 36 100.0 30 .................................... TAAAATACAAATACACATTCGTTTGTAGGT 143 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CAAATGATGATAATATCTAAGTTTAGATTTACAATCCAGTTAATGGCGTAGCATAAAACAGTGACATGTACCCTTTTTACTGGACTAATCCAGTGAAAGGTTTTTTGTATGAAATATAATTATAAGTTTAAGTTAAATGCAGTAGAAATGTATCAATTAGGACAGTGGATTGATACTCCAGATCGTACTGGGGTCTTTTCTATGGTTACTACAGCCAAAATCGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGCTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAAGAAAGTTGTCAGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 4097-3269 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZV01000003.1 Streptococcus halichoeri strain CCUG67100 NODE_3_length_227656_cov_95.327624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4096 36 100.0 30 .................................... CTCTTTATCTTTAGTCAGCTCAAAAGTCTG 4030 36 100.0 30 .................................... GTGAGTCAACGGGTGTCTTTAAAAGCCTTG 3964 36 100.0 30 .................................... ATTAGATATTGCAAAATCAATCAAAAAAGA 3898 36 100.0 30 .................................... TCGTGCCAATATTTTGTATCAGTCCTAGCC 3832 36 100.0 30 .................................... ATTGGTACGAAGAGAATAAAGAAGGCCTTT 3766 36 100.0 30 .................................... TTCAACATAGAGGAATGACAACTCAAGAAT 3700 36 100.0 30 .................................... TCGGCATCTGATAAGGAATACTTACGTATA 3634 36 100.0 30 .................................... TAGCTTATACTATTAACACTTCTTTATACT 3568 36 100.0 30 .................................... TGTTCTTATACATCTTTGTTCCAATAGGGG 3502 36 100.0 30 .................................... AAAAAAGCTAAGATTTTCAGAAGTGAATGG 3436 36 100.0 30 .................................... AAAAAAGCTAAGATTTTCAGAAGTGAATGG 3370 36 100.0 30 .................................... TAACAGCACACAAACTAATGGTGGTACGCT 3304 36 94.4 0 .T.............A.................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAATGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAAAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTTTACAGAGAGGGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCCAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGTTAGTTCGAATCCGGTTGACGAGGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //