Array 1 93480-93146 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOC01000014.1 Escherichia coli strain MOD1-EC5486 MOD1-EC5486_14_length_163593_cov_39.883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93479 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 93418 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 93357 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 93296 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 93235 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 93174 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120612-119180 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOC01000014.1 Escherichia coli strain MOD1-EC5486 MOD1-EC5486_14_length_163593_cov_39.883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120611 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 120550 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 120489 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 120428 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 120367 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 120306 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 120245 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 120184 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 120123 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 120062 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 120001 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 119940 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 119879 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 119818 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 119757 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 119696 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 119635 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 119574 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 119513 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 119452 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 119391 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 119330 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 119269 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 119208 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //