Array 1 40900-39557 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSR01000012.1 Streptomyces thermoviolaceus subsp. apingens strain JCM 4312 sequence12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================== ================== 40899 28 100.0 33 ............................ TCCAAGGAGCACGCCCGGGTGATGGAGAACTTG 40838 28 100.0 33 ............................ TACACGGCGAGCCGCCGCGGGTCGCGCATCCGG 40777 28 100.0 33 ............................ CGCGAGAACATGGCGCCGGCCGCGTGGGCAGCG 40716 28 100.0 33 ............................ CAGCCGGGCCGGGGTGGCTGGGGCGGGGCCGAG 40655 28 100.0 33 ............................ GAGCTGCAGACCGAGCGTGACGCCCGCGATCTG 40594 28 100.0 33 ............................ AAGAGGGAGGGAAAAGGGGGGCAGATTTCGCAG 40533 28 100.0 33 ............................ CGTCCCGCCGACCCCGCGGAGATCGCGCGCGAG 40472 28 100.0 33 ............................ TCCTCTCATCGCGTCGTGGATCTAGGGCCGGAG 40411 28 100.0 33 ............................ CGCGTGATAGCCATGCCCGGCCGCCTGACGGCG 40350 28 100.0 33 ............................ CCGGATCTCGCACCGGATGCCGCCCGGCTCCAG 40289 28 100.0 33 ............................ TAGCCGGATCGTCTCGTTCAGCCTCTCCTCCAG 40228 28 100.0 33 ............................ CCCCTCGGCCGCCCCGCCCGGGTCGGGCTGGGG 40167 28 100.0 33 ............................ GAAGGCCGACAACCTCAACTTCCGGCACATTCG 40106 28 100.0 67 ............................ GCACATTAGGCAAGTACACCGAGAGCCAAGTGGTTCTCCCCGCCAGGCGCAGTCCCGGATGATTCGG 40011 28 100.0 33 ............................ AGGGCCACGACCCAGGCGGTGACCTCATGACGG 39950 28 100.0 33 ............................ TCGCGGTACCGGACAGCCGCTTCCACTGAGTCG 39889 28 96.4 33 .......T.................... TAATGGGTGACCCGCACCTCGCGCCCGTCGGCG 39828 28 100.0 33 ............................ GCGGTCGGCACGCTCTTGGTGCTCGGGCGCTGG 39767 28 100.0 33 ............................ GCAGTCTCTATGAAGATCGCGGCTGGCTCCAAG 39706 28 96.4 33 .....T...................... ACGGGCCGCACCGTGGAATTCCACACCGTCTTG 39645 28 100.0 33 ............................ GCGCGGCGTGGGCCGAGGTGCCGGCAGTCGCCG 39584 28 67.9 0 ........TT........C.A..ACTGC | ========== ====== ====== ====== ============================ =================================================================== ================== 22 28 98.2 35 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGGCCAGCTCAGCACTCAGGTACCGGCCTGCATGCACGGAGCAGAACTGAAAACCAGACAACTTCCCTATATCGTGCAGCCCCGCACACAACCCCACAACACTTCTCGCCCGCTCAACCTCACCGACAAGCCCAAGCCCCTCGGCAATCCTCACCCGCTGATTCTCGGACAGATACGCATCCCACAGATGCAGCGCCATCGCAGCCGCATCCAGACAATGCCGAATCAACGGATACGGCGGCAGCGCCGGATCCAGCCCCCTCGACTTACCCCACACCGACTCATCCGGCGCTCCCGGTCGCCTCGCCATCATCGTCCTCACCCCCGGGGCAGATGCCGTCCCAGTACCGAAGGCGGCATTCAAGCACTTCCCAGTGACAGCGCCACCGCCATCCAGCCCCCGGTAGAGTGACGACGTGCAGCCTCAGCCATCCCTAGATGACATGCTCACCAGAGCAAAGAAAAGGCAAAGCCCCTCTTGAGTGCCTGGTCAGGAAGGG # Right flank : TCCTGCCGTGGCCATTCGCCCCTTCGTGCCAGCAGGCGCACCAAGCGGGGCACGAGCTCGCCGTCCGCGCATGTGTTCTGGTCCGCCGAGACCAACCCACTCTGTTGATAGCGCCGCTCCGATCGCCGACCAGTAGGTTTGGTCAGCGGCGGGCCCGCGCGCCCCGTGATCACGCCGTCGTACGCAGCGCAGCAGGCGGCTGGGGGATCACGGCCTGAGCCATGGCCTGCCGCACAGCGCGAAGGCCACCCGGAGGACCCGGGTGGCCTTCGCTAAGCCTGAACCCTGGGGGTATGGCCTGCCCTCTTCAGAGGGCTACCAGGGACGATGCCAGGGTCTTCGCTGATCAGCGTACCTACGCTCCGACTGCCGCGACCCGTCCGGCGCCCACCTCGAGGTCGGCGTCGACGTCGCGCTGGCCAGGTGCGAGGAAGGCGGCGTCGGCCGGTACCCGGGCGGGCGGCACCGATCCGCGGTTTGAGAATGGGCCCTTGGCGGTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50811-51991 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSR01000012.1 Streptomyces thermoviolaceus subsp. apingens strain JCM 4312 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================= ================== 50811 33 87.9 28 .............................ATGG CGGAGACCAAGGTGCGGCAGGCGGCCGC 50872 33 93.9 28 ..............................GG. TCTTTTCCACCACGAGGTCGACTTCGCC 50933 33 93.9 28 ..............................AT. AGCTCCTAACAGGCCCTCCGCCTTCAGC 50994 33 97.0 28 .............................G... ACGAGACGATCGTGGCCGTCATGGTGCC 51055 33 90.9 28 .............................GGA. GGCAGAACCACCTTCTGCCCGGCCCTGG 51116 33 93.9 28 ...............................AG CGGGGCTGGTGTGACTTGAAGGGCCGAA 51177 33 87.9 28 .............................AAAA GCCGATGATTACCCGCCGTCGGCGGCCG 51238 33 87.9 28 ........................A....AA.C TCGTCGAGTTCCTCCACCCGCCTCATCA 51299 33 87.9 28 .............................AAAA GCCGATGATTACCCGCCGTCGGCGGCCG 51360 33 87.9 28 ........................A....AA.C TCGTCGAGTTCCTCCACCCGCCTCATCA 51421 33 90.9 28 .............................A.GA CGAGTTCGTCGTTGGCGGTACGCAGGAA 51482 33 90.9 28 .............................AT.A GCCGCGGGCTGAAGAAGCTCGCCGGCGA 51543 33 100.0 28 ................................. ATCAAGGCCGCCCCCTGTCATGATCCGG 51604 33 100.0 28 ................................. TCGGCCGCTCGTGCGGCAGGCCGTGGCG 51665 33 97.0 28 .............................G... ACGAACTCGTTCGCGACGACGCCTTCCC 51726 33 87.9 28 .............................TTGC GCGGGTCGGACTTCTCGGTCCAGGTGAT 51787 33 87.9 28 .............................GTAC GTGAAGGGCTTCAAGCCGGCCCGCGACA 51848 33 90.9 77 .........A....................A.C GGGCCCAACGCGGGCCGCGCCGTCATGTCTTCCCACCGACGGCCGCTGAACGAAACCGATGGTGCTTGCCGTACCTT 51958 33 81.8 0 ......T...A....TC.......A.......G | C [51960] ========== ====== ====== ====== ================================= ============================================================================= ================== 19 33 91.4 31 GTCCTCCCCGCCGACGTGGGGGTGTTCCGCCCT # Left flank : CGACGTCCAATCACTTCTTACCCCACGCCACAACGCCGCCGTCGGCACCGACGACGATAAAGACGAAGAACGCTCCGAACGGCAGGACGTACGCATGGTCCACCTCTGGGACCCGCACGCCGGGGTCCTCCCGGCAGGCGTCAACTACGCCGCAGGAGGCAACTGATGCCGTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGCCCACCTGCGCGGCGCCCTCAGCCGGTGGACCAGTGAAGTAGTACCTGGCATCTTCGTCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCTCCTTGTGACGGAGGTCGTGGGTAACGGCGCTGCCGTCCTTGTCCACCCGGCTGCCACGGAACAGGGATACGCCATCCGCACCGTTGGAACTCGCCGCAGGGTCCCCATCGACTTCGATGGTCTTACCCTAATTCGCATGACCCCCAACCCGAAGGCAAAGGAACTGCAAAGCCCTCCATAAGATGCAGGTCAGAAAGG # Right flank : GCGTACAAGCCGGCGGCTGCCCGCCTCGCGTCTTCCCCGCCACGGTGATGACCGAGTGGTGGGGGGATGCCGGGACCTGATCGTCCTCGGCGAGAGCAATGACGGCATGGTTCAGGTGTGGTCGGGCAAGCCCACCGCCGCCGTCCGCGATCCGGCCCGGCACTCGCGTCGAAGCCCCAACGGGCCTTGGAGCCGTTCGCCGCCAGCCCTGCCCCGATGGCCCACATCGTGTGCGCCTCGCCGTGCACCCCGTCCTCGACAGGGCGTCACTGACACCCGCGGCACTGCGGTCGGTGAACGAACAACTGCGGTTGCACAAGCTGCTGGGCCGCTCCATCTCCGGCCTGCCCACATCACTGAACGGCGTGACCGGGGCTCCGTACGGGCCGGTGTGGCCGCTGGACCCCCCTGTGGCCGCACTACCTTCGGCGCGTCCGCGACTGGCTGACCCTCCAGCAGCACGCCACCACCAGGCAGTGGGCCGGACACCTCGCCGCCGC # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGTGGGGGTGTTCCGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //