Array 1 1045294-1045950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006723.1 Leptospira interrogans serovar Linhai str. 56609 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1045294 36 91.7 33 ..........C..........G...A.......... CATTTTAAATTTTTTAGTTGTCCAATTTCTTGT 1045363 36 100.0 33 .................................... TTTTGTAAGTTCTTCAATTGTTTGATTTCCTTA 1045432 36 86.1 33 .........T.G............CT.....C.... AATTGTAAATTTTTCAGTTGTTTTATTTCTTGT 1045501 36 86.1 33 ......AC...G..........C..A.......... AATTGCAAATTCTTCAATTGTTCGATTTCTTTC 1045570 36 83.3 33 ....A..........C......T.C.C........A GTTTGCAAGTTCTTCAATTGCTCGATTTCCTTA 1045639 36 86.1 33 ......................T.CTC...A..... ACTTTCAAATTCTGTAGTTGTCTAATCTCCTTA 1045708 36 77.8 33 .....TA......T........T.C.C.....T..T GTTTGCAAGTTCTTCAATTGCTCGATTTCCTTA 1045777 36 86.1 33 ......A.............G....A....CC.... AATTGCAAATTCTGTAATTGTCCAATCTCCTTA 1045846 36 80.6 33 .....TA......T........T.C.C....T.... TCTTGTAGATTCTTTAGTTGCCCGATTTCCTTA 1045915 36 69.4 0 ...........G....TT.GT.C.CTC....T...A | ========== ====== ====== ====== ==================================== ================================= ================== 10 36 84.7 33 GGAAGAGTTGTAAGTTGGTTATAATCTAAATACAAC # Left flank : TTTGACTACTCAAATTCAAAACTCGAACATCCAAAGGATTTTTGAGCGCTTTTGTTAAATCCCTATAAGTTCCTGGTTTTATTTTTTCTGCTTGAATCTCGCAAGATAAATAAATGAGAAACAGAAGACCAATTGTTATTTTTGATAAGTGAATTAACGTTATGCGGAAGTTCATGAAGGTTATCCGAATTGGGATTTATTTGAATAGGAAGACAAGTTTCTAAATAAAAATAAAATGTCATTCAATTTAAACGTTCTTTTTTAAATTACTAAGTGTTTGTTGAAAGTAAGATCCCAGAAATCTTTATCTTTGGTTTCAAATCTAATAATTTTTCATTTCATTCAAGTTAGCTTAAGGTTCATAAGAGAAAAAGAAATCTTATTCAAAGTAAATTTGGCACTTTGGAAGAAGCTTTCGAATCCTTTCTTTTTCTTCGATTGAGAGTTGATTGTTCTTTAAATTCAACGATTTCAAATTCTTCAATTGTTCGATTTCTTTC # Right flank : AATTCGAACATCCAAAGGATTTTGGAGAGCTTTTGTTAAATCCCAATAAGTTCCTGGTTCTTCTTTTTCCGTTTGAATCTTGCAAGAAAGAAAAAGACCAATTATTATTTTTTGTAAGTAATTCAAAGTTATGCGAAAGTTCATAAAGGTTATCCGGATTGGGATTTATTTAAATAGGAAGACACGTTTCTAAATAAAATGAAAACGTCATTCAATTTAAAACGTCCTTTTTTAAATTACTAAGTGTTTGTTGAAAGTAAGATCCCAGAAATCTTTATCTTTGGTTTCAAATCTAATAATTTTTCATTTTATTCAAGTTAGCTTAAGGTTCATAAGAGAAAAAGAAATCTTATTCAAAGTAAATTTGGCACTTTGGAATAAGTTTTCGAATTCTTTTTTTTTCTTGGGATGAGAGTTGATTGTTGTTTAAAAACAATTCTTGCAAATTCTGTAGTTGTCCGATTTCTTGTGGAAGAGTTGTAAGTTGGTTAGAATCCAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGAGTTGTAAGTTGGTTATAATCTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GGAAGAGTTGTAAGTTGGTTATAATCTAAATACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1136094-1136272 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006723.1 Leptospira interrogans serovar Linhai str. 56609 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1136094 36 94.4 36 ........T...................G....... CAAATTTCCCACGCGTGGGAAATTTGGCTCATTCGA 1136166 36 100.0 35 .................................... CAAATGTAAACTCAGATTTACATTTGATTGAAGCG 1136237 36 94.4 0 ......................A.....A....... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 96.3 36 GTTTCTTTCTCTTATTCAAGAGGAAGTGCATTGAAA # Left flank : ATAGAGAACTTCCCCAATTGTTCTTAAAACTAAAAACTTTGTAAATGTTTACTGTTAAGTCGGATTGTTTGTTGAGTTTAGATTCAATTGTTTGTGAATTGATCTCTTTTAAAATCTCTAAAAGTTGTACAAACCAAAACACGTTTGTTAAAAATTTTAATTTGAGATGACTTCTAAAAAATTCTTTTGTTCCTTTTCCAAAAATTTCAGTTAGACGAACTTTGCCTCATGGATAGTCAGTCTTTCATCAATCTATCCTAAAACCCTGTTATAAGTTTGTCTTTGATAAGCCGATCTTTTAGAATGAATTGTTTTTTGCGAACCTGTTTCTCCCGGTAAATTACGGACCTTTCGCGCTCTTGCATGGATTCGTTGTTTGGCGATGTAACGGTTCCGCTTAACAATTGTGTAATATGGTAAAAATAGGTTCGCGATTATTATGTTTAGAAAGCTTAATAGAGCATTTTATAATACATTATTTTTAACCCTATTGAGCCGCC # Right flank : ATGTCGGTAAAGTGGCCAAAGGCGAAATGGAAGTTCGTTTTTTCCTCTTACTCAACATGAGTTCCTACAATTTCAGAATTTGTTCGTAAAATTGTGATTTGCAGTAGTTCCCACATCATTTTACAGAGGCTTTGTGGTAGTTCTCACAAATCAGAGCTTGTCCCAAAACCTCAAAGAATTTTACGCAATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGTTCCTAGAGATAAGTTCTCATTTGGCAATTTGCGGGCTTTCGAGTAGTTCTAATGCCGTTCCATTTTCGTAGTAGTTCCCACAAATTAAGTCACATTGTGAATATAGGTTTTAAATTCAATTTTTGTAAAGTTTTTCGAACTAAAAAGTTTTACTGATTTTTATAAAATTAAATACCGTGAATTTTTATCCTAAAACCCTGTTATACGGTTTTGAATGGATTTTATTTTAGAAAAATCATACATCTAAATCACGTTTACTTTCATTTAAATACAGTGT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTATTCAAGAGGAAGTGCATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //