Array 1 869-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLG010000022.1 Neisseria sicca isolate Neisseria_sicca_BgEED21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 868 36 100.0 30 .................................... ATACGGCGAAGCCACCGAATAGAACCAGTC 802 36 100.0 30 .................................... TCGCCGCGCAGCGTGCCTAGCAGTGTGTTT 736 36 100.0 30 .................................... AGCGGCTTTTGCCGTATTCGCTGATTTTGT 670 36 100.0 30 .................................... GCGGTTTGGATTCGGTTTTTTCTGCCAACG 604 36 100.0 30 .................................... TGGGGCTGCTAATTCATACGCAGTTATAGC 538 36 100.0 30 .................................... TGACCGGGCTGAATCAATATATCGAGCGGA 472 36 100.0 30 .................................... CTGTAAACCAACACGATAACCCATACCGCA 406 36 100.0 30 .................................... ATCGGCGACGTAATTCAAAATGCCTTCAGT 340 36 100.0 30 .................................... ACCCATATGAGCAGTGGAACCAAATACAAC 274 36 100.0 30 .................................... TGTTCAATGCGTTAATGGCCTTCTGTTCTT 208 36 100.0 30 .................................... TTAGTATCATGTCGATACCGTAATGGCCGT 142 36 100.0 30 .................................... ATCAGCCTGCTGCTCGTTTCGCGCTTTTTC 76 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTGCTCAATCAGCGCGACCGTTTCATCGATTTTTTCCTGGGCGATCGGGCGTTTGTGCAAAGCCCGTTCCAAACTGGTTTTCAGCTTGTGCGGATTAAACGCCACGCGCGTACCGTTGGATTTAATCACCTGCGGCATCCTCATTTCAACCGTTTCAAACGTGCTGAACCGCTGTCCGCACTCCAAACAGCGGCGGCGGCGGCGGATACTGTTCGTCTCTTCCAAGAGCCGCGAATCTGTAACTTGAGTATTGGGATGCTGACAAAACGGACATTTCATAAGTTTTTGAGTTTATTTGTTTGTGAAACGGAATTGTAGCCGATTGAGTTATTCCCGTATAGTCGGTAGGTTTATTGAGGGTTGAAGAGGTCGTCTGAAAACGGAAATTCGAGCTTTCAGACGACCCTGCAGGAAATAATATGCGGTGCCAATTTCTGATTTTATTCTTTCCTATTTTGCAGTGCTACAATGCATCGAATGACGCATACTGACTTGTATGA # Right flank : TTGTTCAATGCGTTAATGGCCTTCTGTTCTTGTTGTAGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 17093-13031 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLG010000029.1 Neisseria sicca isolate Neisseria_sicca_BgEED21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17092 36 100.0 30 .................................... TGTTCAATGCGTTAATGGCCTTCTGTTCTT 17026 36 100.0 30 .................................... TTAGTATCATGTCGATACCGTAATGGCCGT 16960 36 100.0 30 .................................... AGTTTTAAAAATCATCATTGCCGCAGTGAA 16894 36 100.0 30 .................................... AAACCCCGTCGCACTTTCACCCGGCTTTAA 16828 36 100.0 30 .................................... CCAATACCGTCTTGCCCATCGACGGGCGGG 16762 36 100.0 30 .................................... CGGTTTTGACCGAAGAACTCTTTAAGCTCT 16696 36 100.0 30 .................................... TACCTTCAGGCGTAACCGTGAAACTACCGT 16630 36 100.0 30 .................................... CAGAAAGAACAGGCAATAAGGGAGGTTTAT 16564 36 100.0 30 .................................... AACGAATTGAAGTCATGTTACAAAGCGGCG 16498 36 100.0 30 .................................... GTTGATGCAAGGCTTCCGCATGGCCTTCAG 16432 36 100.0 30 .................................... GTCTAGATACCTCATTCGCGATAACACGTC 16366 36 100.0 30 .................................... AACAAATTGCCGAATACTGCCATTGCTCAC 16300 36 100.0 30 .................................... GCTGCGGGACTACTATATTGAACACAGCCC 16234 36 100.0 30 .................................... CGCCATCGGCGCGATTCCGCGCGTACACGA 16168 36 100.0 30 .................................... AACGGCGCGACTAACCAAACAGAACAAGGA 16102 36 100.0 30 .................................... GCCCGGTGCTTTTGAAAAAGCCCGTCATAG 16036 36 100.0 30 .................................... GTCAGAAGCATTTTCAGGCGACGCACCCAA 15970 36 100.0 30 .................................... CCAATGCCGGTGTTCCTTCCCGGCAACTCG 15904 36 100.0 30 .................................... TTTCAGAGAAGAAGCTGACGCGCAGGAATA 15838 36 100.0 30 .................................... AAGCGTGATTATGCAGTGTAAGCCGACGGA 15772 36 100.0 30 .................................... AATTAGGTCTTAAAAGCTGATTCATATCGT 15706 36 100.0 30 .................................... CCGCTTGATAAATCAGGCGGCTTTTGCTTT 15640 36 100.0 30 .................................... CTTATATATCACTCATTCTCAACGGCTTTC 15574 36 100.0 30 .................................... TGTGGATAAATCCACCGCTACGCCAGTATT 15508 36 100.0 30 .................................... CATTTACGGTTTTTTTTAAATCATCAGACG 15442 36 100.0 30 .................................... GGAAAATCAACCACCATCATGCACCCCCAC 15376 36 100.0 30 .................................... TCCCATTCGTCCATCCCGCCCAAATATCCG 15310 36 100.0 30 .................................... CACATCAAAAGCATGGGATGCGTCGCAAAT 15244 36 100.0 30 .................................... GCATTTATCGTCCAACGCCGCGCCTTCAGG 15178 36 100.0 30 .................................... CGACCAAGAGCGAGCCAAGACATACAAAAA 15112 36 100.0 30 .................................... AATCAATCTGTTTTGGACGATTTTGAAATT 15046 36 100.0 30 .................................... CGATTGCCTTGTTCACCATCCACTCAATCG 14980 36 100.0 30 .................................... GGCACAGCACAAGATTATTTTCCGCGCCCT 14914 36 100.0 30 .................................... TTTGGTCGGTGTGCCTGAAGGGTGGTCGTC 14848 36 100.0 30 .................................... GCTACCGCAACATGGGTCGAGTATTCTCGG 14782 36 100.0 30 .................................... TGAGTTTGCCGAACGTGAGATTAAAACCTA 14716 36 100.0 30 .................................... TGGAAAATATCTCTATGATGATTCTGAGGT 14650 36 100.0 30 .................................... TAGGCGACAAAGGGATGAAGAGAGAAATAA 14584 36 100.0 30 .................................... ATGAGTGCAATTCAGAAGATCGAGTCCGGT 14518 36 100.0 30 .................................... AATCATTGTTCCGTTTAAAACAACGTCAGC 14452 36 100.0 30 .................................... TCCAGCCAGTCGGCAATGTCTTCGATATTA 14386 36 100.0 30 .................................... AACTTTGAAGTCCTTATCGGATGGGTTTCG 14320 36 100.0 30 .................................... AGAGCGAGCCAAGACATACAGAAAGACGGC 14254 36 100.0 30 .................................... AAATCTCAGACGAACTACGTCAACTATCGG 14188 36 100.0 30 .................................... CGCCTTTCACGCGCTTCAGCCAGCGATATA 14122 36 100.0 30 .................................... AAACAATTTAAATTTAATGCCTTCTTTTTC 14056 36 100.0 30 .................................... TTCATTTTTGTCTATTGATGATTGTTTGAA 13990 36 100.0 30 .................................... TAAAAAACATTTTGAACCATATATAAAAGC 13924 36 100.0 30 .................................... CTTTGTTGAAAAATATGTCAAGATTTTGAC 13858 36 100.0 30 .................................... ATGAAGGATTGTCTGTTTTACATAAACTTG 13792 36 100.0 30 .................................... TGGTTATTATCATGAACGTATCACAGCAAA 13726 36 100.0 30 .................................... TTCAATTGCTTTGATTGCTTGTTCACTTGT 13660 36 100.0 30 .................................... ATTTTCTGCCGCCATAACTTGACCGCTTGC 13594 36 100.0 30 .................................... ATGTCGGAGGAGCTGAATCTTACCGAGGGG 13528 36 100.0 30 .................................... ACGACATACATGGCGTCAAGAACGTGGAGA 13462 36 100.0 30 .................................... GTGGTCGATGTGGGCAATGATGGAGAAATT 13396 36 100.0 30 .................................... TTTGGGCAATAAGTCATGGTCGGCTTCGAA 13330 36 100.0 30 .................................... AAATCGCATTTGTGAAAAGCATGGGGAATA 13264 36 100.0 30 .................................... TGCGCCGCCTTTTACTTGTGAATCCAACTC 13198 36 100.0 30 .................................... ATACTTGCCCGCGTACTTCGCAACAGGGAA 13132 36 100.0 30 .................................... GTATAGACAGCGACAGGACTGTCATTGCCC 13066 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 62 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : ATCTCAGCGGGGAATCCTTATTTTATAAGGATTCCCCGCTTTCTTTTGTCTAAAAAACGGAGACTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCACCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCCGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGCAGGTTGGCTCATAGTCTGTTGTGGTGTTTCTGCAACGCATCTCTGCCTTTGACAATCCGGCTGTACACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGAGACGGTGGTAACCGGCAGGTCGAAAAAGACGATAATCCGCATAAACTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGCCTGGCGTTTTTTGCGACGATGCTCGGCTGGAATGAGGCAATCATTTTGTCTATGGCTGCTAGTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 31492-31987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLG010000061.1 Neisseria sicca isolate Neisseria_sicca_BgEED21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 31492 33 100.0 34 ................................. CGCCGCCCGCCGCGAATTTCTGAAAACTTGTCAA 31559 33 100.0 33 ................................. TTCAGACGAACCCAAACCCGACAAAAGAGAATA 31625 33 97.0 32 A................................ ATTATTGCTTTGTCTCCATTCTGCTAATTTGA 31690 33 97.0 33 T................................ CGTTAAGCCAGTCAGATCCAATTTGTGCCACCA 31756 33 100.0 34 ................................. AGGCTTGGCAGAAACGCCAAAAACAGGCGTCCCA 31823 33 97.0 33 A................................ AAAGAAGAAGCAAAGGCGCAGCTTACCGCAACA 31889 33 100.0 33 ................................. TCGAAACACTGAAAACCAACACGATATCCCATA 31955 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ================================== ================== 8 33 98.5 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGACTGCGGCGCGTGGCGAAATTATGTTTGGACTACGGCGTACGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTATCATCTGGGCAGCAAATGGAGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTATTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CAAAAACGTCCACAGCGTAGACTGTCAGGACGTCTCAGGTTTCGCTAACCATATGTCGAAACCAGACTGTGTTTTACTGATTTAAACCGTCTTTAACCATTTGCTTCTTGATGGTTATGTCTGAAAAATTATCTGTGGAATAGGAAATCGTCAATCCATCAAATCTCTGTCTTTCAGACGACTGTAATCGGATTTGTTCTGTTCTGATCAAATCAGATTTTCCAGCTTCGGGCTGTCGGATAAATTTCCAGCTTCAAGCTGTCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAACGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAATTGGACGATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //