Array 1 1-1022 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVR01000039.1 Acetobacter tropicalis strain NBRC 16470 sequence039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1 29 90.6 36 ---............................. GGGATGGACGAGGCCTACAAAGCATTTCAGCCCCCG 66 32 100.0 33 ................................ TATGTCAGACGATGATGCGGCCTGTATCTGTGC 131 32 100.0 34 ................................ GTGCTCTCTCTGATGCTGGCTTGGAACTCACGCA 197 32 100.0 33 ................................ CAAAATGAAAGCCTGCCGTTGCCGGTCGTATCC 262 32 100.0 34 ................................ GTCTGGATAGACCGTGCCGCATTGTTGCCCAGAG 328 32 100.0 34 ................................ TATGATCTTGCCTGTAAGGCTGATTTGGTTGTTG 394 32 100.0 35 ................................ ACAGAAATTGGCAAAGGCCATTGCGCCCATTGCCC 461 32 100.0 35 ................................ CCAAAAATGTTTGCGATGATGGATAAAGGTGAGAT 528 32 100.0 34 ................................ CAGTGGTTCGAGGGGGGCGCTGTCTCCGGCGCGT 594 32 100.0 33 ................................ CGTCAACAGATAACGGGACGGTAGCTCTGGATA 659 32 100.0 35 ................................ ATGATAAGGTGGGGGATGTAGGCTTGCCTGTGTTG 726 32 100.0 34 ................................ CCCTATCGTGGCATGCTGGAATGGCAAGAACAGT 792 32 100.0 34 ................................ CAGATAGATTGTTGCTGGCATCACCGACAATATC 858 32 100.0 35 ................................ AAATACCCGGAGCCGGGGTGGGAAGAACGGGCACG 925 32 100.0 34 ................................ TTTCTGCTGATTCCATTCCAGTCCGATATCGTAG 991 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.2 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : | # Right flank : CTGCCTGTTCATAAGCTGTTTCGCTCCGCGTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTGCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTCTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTAGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCATTTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43523-44751 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVR01000015.1 Acetobacter tropicalis strain NBRC 16470 sequence015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 43523 32 100.0 33 ................................ TCGAGTGTGGTAAGTAGTATCTTATGACAACAT 43588 32 100.0 34 ................................ AGCAAACGTATCAGACACTGAGGCTGAGGCTGTT 43654 32 100.0 36 ................................ TCCTTCACTAGCCGCAGAAAGCTGGGGAATTGGCCT 43722 32 100.0 35 ................................ TTGTAGAGGCCAAGGACATCGTTATAGATTTCCAT 43789 32 100.0 34 ................................ AGGCGGTTAATCAGATCAAACCGGGCTGCACCCG 43855 32 100.0 36 ................................ AATCTGAAAATGGGTAGCCGCTTCCGCTCTTATGAC 43923 32 100.0 34 ................................ TTCAAACCACGCGATGTCAGCCCCTTCCAGAGAC 43989 32 100.0 34 ................................ TGGCCTTACTGGATCAAGGATACTCGCGCCGATC 44055 32 100.0 35 ................................ CACATGCAGCACAACAGCCTCCCCCTGGATGACAA 44122 32 100.0 35 ................................ AAAGGACACAGCGGAACCGGAACCTTTGATTGGGC 44189 32 100.0 34 ................................ TGCTCGGCGCTCAGCCTGATCCAGCATCTCGGAG 44255 32 100.0 35 ................................ GGGATATCCCCGTAGCCGCCGGTGTCCCGGCACTA 44322 32 100.0 34 ................................ TGGACGATGCCTGCTGTAGAGCCGCTTTTGCCTG 44388 32 100.0 34 ................................ ACGAAAATGATGTCACCCGAAGGGGTCATTATCC 44454 32 100.0 34 ................................ CTCCCAATCCAGAAAGGGATGGTCTGTATGCAAT 44520 32 100.0 35 ................................ TCTGGCCCTCCAACGATGGTTATGGCTACAGCAGG 44587 32 100.0 35 ................................ ATCTGCCAGCCAGCTCTCCACGTCCTCTGGAGATT 44654 32 100.0 33 ................................ TGTCCCGCAACAGCAATACGGCCAACGTCATAC 44719 32 87.5 0 .............T...G......G......T | C [44738] ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.3 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACCGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAAGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCAGCAGCACTCGCAGCCACCAGTTCGCGCAAAAAGCGCATTCCGCCCAGCCCCAGACAGGTGCTAAACCTACACC # Right flank : TATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCACATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTGCGGGCTTCAGGGCATCTATGCGCAGAGTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGGAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCTCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1877-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVR01000046.1 Acetobacter tropicalis strain NBRC 16470 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1876 32 100.0 35 ................................ GTTGCCTGACTGTGCTTTAAGCGGCACGGGTTGGC 1809 32 100.0 35 ................................ GCCCGCGTTCATGCGCACAGCACCACCAATGGAGC 1742 32 100.0 34 ................................ TGCACCGGCATTGACCACGCCAAGGAAGTAGCTG 1676 32 100.0 33 ................................ TGATTTCTTTAGGGAACAGCATGAGGGCGCTTT 1611 32 100.0 33 ................................ TGTTCAAACTGTAACACCTCACGATCTGGCAGC 1546 32 100.0 34 ................................ TGCATTTCCTGAACTATTCGCACATCCTCGTCAC 1480 32 100.0 34 ................................ CGTCCGGGTAATTGGTCCGGTCGTCCCATCCAAC 1414 32 100.0 33 ................................ ACCTCTTCCACGCTCCTATATCGTGAGAGTAGC 1349 32 100.0 35 ................................ TTGTATCATCACAAGGCTTACTCAGGACGCACCGG 1282 32 100.0 34 ................................ CACTGACTGGAATGCATTATTTACGAAAGCTGTA 1216 32 100.0 34 ................................ TACAGTGAGAGCAAAAGTTATTTCCCTCACATCA 1150 32 100.0 33 ................................ TCTAGTGTGGTAAGCAGTATACTATGACAACAT 1085 32 100.0 36 ................................ GCACGTCATGATGTCGGTGCCGTTGGAAGCGTAGTG 1017 32 100.0 36 ................................ AAGATCAATGGGCTGCCCATCGGTACCACACTTAAC 949 32 100.0 35 ................................ AATTATGTTGACCCGGCGCTGATTGACATTCTTGT 882 32 100.0 39 ................................ TTCGCAAAGACAAAGCCTTTTTTCAGCAGAGGGGTTTCG 811 32 100.0 35 ................................ CAGTTTGATAAAGCCGTCACCGTAGGGCTGTAGGC 744 32 100.0 34 ................................ TGTCTGGTAGCCCTGTGCATCGTAAAGAAGGATG 678 32 100.0 33 ................................ ATGGTGTCATAAACTGGGAACCGCTTGCCGGTC 613 32 100.0 35 ................................ CGGCTCTGCAACATTCGACATCGCCAGCGTCATTG 546 32 100.0 34 ................................ ATCGCAAGTGGGGTCTGAACCGGCCCCCCCAATC 480 32 100.0 34 ................................ CTCCAATCGGGCACCCCTCTGCAATCTTAAACCG 414 32 100.0 33 ................................ CCATAACCCACCAGCGGACGGGCTTATAGAAAT 349 32 100.0 37 ................................ GTTTTGCACGAGCGAAATCAGGCGGCTGCTATGGTAA 280 32 100.0 36 ................................ ATGCCGTAGGGTTTTTACAATGTTGCGGTATTCGCC 212 32 100.0 37 ................................ CCGGTTCAAATCCGCCCGTGATGTTATCCAGACCAGC 143 32 100.0 33 ................................ CGTGATCTTTCCGGACAGGTTCCGCGTCATGCG 78 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : AGGTTGGCAGGGGGCACAAGGTGCAGAATATGTAACAGCATACCGCCACCCGGGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCACAATGTCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGTCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCCCTTAAAACCCCGCCAGGTTCGCGCAACCCATAACCCTTTAAAACAAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCCTTTTCTGCTGCTATGCTCCCACA # Right flank : CTTTCCCTTCGTTTGCCGCGTCTGCCACAGCGGCAGTCGCTCCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //