Array 1 70839-73235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAT01000009.1 Porphyromonas gulae strain COT-052 OH3856 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 70839 46 100.0 30 .............................................. CGCCGAGAAACTTTAGATAACACTGCAAAT 70915 46 100.0 30 .............................................. GGGGAAGAATATCCTGTTACCGACTTCGTT 70991 46 100.0 29 .............................................. GCCCCCGAGCACTCCGAGTCTCTTGATAT 71066 46 100.0 30 .............................................. GTCTTCATTATTTATTTCATGATGAGTTAA 71142 46 100.0 30 .............................................. AATGACAAGATCACAAATAAGAGATAGATT 71218 46 100.0 30 .............................................. AGCAGCTAACCCACTACGTGTAAGTTCAGA 71294 46 100.0 30 .............................................. CGGAAAAAACTTGAATCTTTTTTGCGCTCT 71370 46 100.0 30 .............................................. TACCTAAGCTGGGTATGGATACATATGATA 71446 46 100.0 30 .............................................. TATCCGAAGCCTCGTTGTAGTCTCCAGTAT 71522 46 100.0 30 .............................................. CCATCAGTTCCAACCAGTAGTTGATTATCA 71598 46 100.0 30 .............................................. TAGCAGAAATGCGCACTCTCAATCTTCGTA 71674 46 100.0 30 .............................................. ATTGAAAACAATGACAGACTCACGCTCAGG 71750 46 100.0 30 .............................................. ACACTTGGGGCAACAGTGGAATTATCGGGT 71826 46 100.0 30 .............................................. AAAAAAAAGAATCGAATTATGAAACGTCAA 71902 46 100.0 30 .............................................. GCTCAAAACTTTGAATCTTTTGATTCGTTA 71978 46 100.0 30 .............................................. GAAAAGGAAGAAAGGGTACTCAACTGTACA 72054 46 100.0 30 .............................................. TCCCACTGATTACTTTACTGAAATCTTTAT 72130 46 100.0 30 .............................................. AGTTTGGAAAGAATATAGCGCAAACGTCTA 72206 46 100.0 30 .............................................. ACCCCGTAACTGTTCTTTCCCTTATCCATG 72282 46 100.0 30 .............................................. ACTTTTTGAATTATTCATCAATACAAATAT 72358 46 100.0 30 .............................................. TTTTAATAGTCTCTTTTTGCTCAGCACCAA 72434 46 100.0 30 .............................................. AAAAGCTCTTTAATTTATCAAACTGTTTGA 72510 46 100.0 30 .............................................. TTATATTCATTTCTTGTTATTTTCATGAGG 72586 46 100.0 29 .............................................. ATAAGAAGTCATAGAAAGGACTAAATCCC 72661 46 100.0 30 .............................................. CGGACTGTTTGGAAAGAATATAGCGCAAAC 72737 46 100.0 29 .............................................. GACAACAACGACGTAAAGAAATCTTTGTC 72812 46 100.0 29 .............................................. CTTCTTACTAACTCATCGGATAGTTCATT 72887 46 100.0 30 .............................................. ATCAACCGATGAACGAAAAGAAGCATATAG 72963 46 100.0 29 .............................................. GGCGACTTCACGCTCGCGGTCTCTAAGAT 73038 46 100.0 30 .............................................. GAGAGATGGCCATGATGTCGCAAGAAGACG 73114 46 100.0 30 .............................................. CTGTGCGTCTCGTTTTCAAAAACACCTTTC 73190 46 97.8 0 .............................................C | ========== ====== ====== ====== ============================================== ============================== ================== 32 46 99.9 30 GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCAATACATATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGATACTGCAGCCGACAGGAAACGTGCAGCAACCTTTCGCAAAAACCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATTAGGCACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGAGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCGGCCATGGAGATCATTTGTGGGAAAGGAAGAGAATATTATCAGCCGCCCCTCCAACTTGAGCTTTTTTGAATATATCCTAGCATCTTTTGCGGAATTAACCCTTTTTATCTGGGGTATAGAAATTAAAAAGCCGAGATTTCTCTCGGCTTTTCGGTTACACACAGATGTTTTTTTCTTTCTCTCAATCCCTCTCTATATCCTCTATTACAGGTGATTACGGGGATTCT # Right flank : CGAAAAAATGGAAAGCACAAAACCCTGAAAATAATAATCTACTCAAAAATCATGCGCAAAAAAAGTTTTCAACAACGAAGATGAGTTTGGAATGATTCCAAATAAGCATCTGCGGAGAAAAGAAAAACGAGGCAAAAGTAGCGAGGAAATGGACTTTCACGGACTAAAATACGAATTAAAACAAGCCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATATAAATCGTTTCCGTTTTATATATAAATCGTTTTCAATAAATATATAGATCGTAAGTGATTTATATATAAATCGCAGACCCCAAAAAGCCTTTTCCGAAGTCGGAATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCCGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCCTTTTGCATGTGATTCAATGTAGCTGCACGATTCCGCTCTGCGATCTCGGATCGGATCGAGGGCTGTCGCTGTACCGAGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 288259-289383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAT01000012.1 Porphyromonas gulae strain COT-052 OH3856 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 288259 37 100.0 36 ..................................... TTAGCAAATCCTCTTAACAGTCGTCCTCTTCTAGGA 288332 37 100.0 37 ..................................... TAATTATGAAAACAAAAGTTGAAAGTTTCAGTGAAAA 288406 37 100.0 34 ..................................... CTGTGGATGGTATGGTTATTAGGTCTTAAGTTGT 288477 37 100.0 35 ..................................... CTAAAATAGAAAACGGAGAAGTTTATATATCTGAG 288549 37 100.0 34 ..................................... TTAATAATGAAAGCAAAGAAAACCTAAAAGAGTT 288620 37 100.0 35 ..................................... AGGTTAAAGGCAAATTTACAGATACAATAAGACAT 288692 37 100.0 37 ..................................... AACAAAAGAAAAAAAAACGGTACCTGAGGTAAACTTT 288766 37 100.0 32 ..................................... AATATGTCAATACGGAAAGTAAAAACCAAAGC 288835 37 100.0 37 ..................................... AAAGAGCTGTTAAAAACTTAGGACTCACCCAAAACGA 288909 37 100.0 35 ..................................... TTCAAGACCAATTCCTGTTGCTATTGTAGTAAAGG 288981 37 100.0 36 ..................................... TCATTATCTATCTATTAGGATTGATAGCTATGAAAA 289054 37 100.0 37 ..................................... AGGATTCTTACTCTTCTTCTCTCATTACCTGGGAAGT 289128 37 100.0 36 ..................................... GAAAAATCCGGGAGTACTAAAAAAAATCTTAACAGG 289201 37 100.0 37 ..................................... TTATTGTAGAACCAGGACAGAATCGTTCTGTATACTT 289275 37 100.0 35 ..................................... GTTAAAGGAGATTCTGGAGAAGAGTTTTACATGCT 289347 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : AGATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGCGGCGCGGGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACGTTTTTCGGAGCATCGAAATAGAAAATTATGGTGCGCAAACGGCCTTGGCTCGCACACAAGCGGAAGGCTGTGATTATGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACTTGGAAAGTCCAAGTGATGATGAGTAGAGCATCAAGA # Right flank : GAACTTGAGTGACTGCAAGTTACGAATAATCCTAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATGCAAGTTGAGAAATGCAGCTATAACACCATTTTTGCTGTTGAGCTGATTATATCTTATTGATATACAATCAGATTAGCTGATTTTCTATTTTCGAAAATCAGAAAGTGGTAGCCTTCGTTTTTGGCATTTTCGAAAATAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAACACCCCTGTTTTTCGAAAATAAAAGTCCCAATTCCCGTTTTCTCCTATTTTCGAAAAAAAGGAGAAAAGGGTTGTTTTTGCAACCGGCTGATAATCAGTACGTCAAAGAGCGATGCGTGGTTCGAGTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCTGCAGCATAACAATGCTGACAGAGAGGAAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 408323-411524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAT01000012.1 Porphyromonas gulae strain COT-052 OH3856 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 408323 30 86.7 36 T........T.C.C................ TGCAGTCCCTTAACGCCCCCGCCGTTCAGTTCGAGC 408389 30 100.0 36 .............................. TATTTTATGACATGGCGAATTATTCAACTCCGGAGC 408455 30 100.0 36 .............................. TTTTCTACGGGGAGCACGGCCCCCCTCTTTTTCTCA 408521 30 100.0 40 .............................. TCTCTCGGAGGGCTTTATGTGCTACGTGCAGAACAACGCA 408591 30 100.0 37 .............................. CATGCTATCGCAGAGACAGTACGCGCGCTGGTAGCGT 408658 30 100.0 34 .............................. CAAAATAAGTCTATATATAACAGCATAACGCTAT 408722 30 100.0 36 .............................. CACGAGACTTATTTATTAAAACAAAACGAATATGAT 408788 30 100.0 36 .............................. AGGTTTATCTTTAATTATACCAACTCCAGTATATGT 408854 30 100.0 36 .............................. AATCTGCTTCCTTTAATGGCGCAGGTGAATAAATAT 408920 30 100.0 36 .............................. AAAGCGGTCTGAATCAGAAGCTGTTAATTATATTTT 408986 30 100.0 36 .............................. ATTTGCCGGAAAAAGAATACGAGGAAGGGGAGCACA 409052 30 100.0 35 .............................. CTGCTTATTCAGCTGAGAGATTTGCGAGTTATGAG 409117 30 100.0 35 .............................. TATATGACATCGTGGAACAGAGCGCAATAGTCAAA 409182 30 100.0 35 .............................. GATTTACATATGTTTGGAGATATTAATTATAAAAT 409247 30 100.0 37 .............................. ATATCATTTCGTTCTTTCAATGATATAACTACTTTCA 409314 30 100.0 36 .............................. TGATTATTTCAAGGATACTATAAAAGGAGAAATAAT 409380 30 100.0 36 .............................. TAGAAGACGGTAATATGTTTGCTAATCTTGAATGCT 409446 30 100.0 36 .............................. AAGACAGCCCAGATAAACAAGGTTGTCAAAGAGGGT 409512 30 100.0 36 .............................. GTAGGAGGTGGAAAATAAATTAGAATTGAAAAAAAC 409578 30 100.0 36 .............................. AAATCAGATGGAACCGAAGCGGGCTATTCTTGGAAG 409644 30 100.0 36 .............................. GTATAGATCAAGAAAGAGGCTTCCTGTGATATTCAA 409710 30 100.0 37 .............................. TTAGAAGACGGTAATATGTTTGCTAATCTTGAATGCT 409777 30 100.0 37 .............................. TCCAGCGCCTTTGTGCCAAGCAGTGCCCCGATCTTGT 409844 30 100.0 37 .............................. CGCTAAAAACGCTACTCGTGCCACAAGAGTAGCTAAA 409911 30 100.0 35 .............................. AGCAAAATTACTGCTTTTTTTGACTGTGTATCTAT 409976 30 100.0 36 .............................. ACGCGGAGGGTGTCGGAATGACATACGAAGAGCTGA 410042 30 100.0 36 .............................. ACTGTCCGAGCAACTCGCGCAGCAAAACATTTCCAC 410108 30 100.0 39 .............................. ACGTAAACAGCTTGCCCAGGTGATCTATGTATAATTTTT 410177 30 100.0 34 .............................. ACAATATATCAATGAAAGTAGTATTATCTCTTAA 410241 30 100.0 37 .............................. TAGATGCGGAGATACAGCGCGCAAACGAGATAATTAA 410308 30 100.0 37 .............................. TATTCGTAAATAGCAAAGATTGTCACTTCTGCTCACA 410375 30 100.0 36 .............................. ATTTTTCTATAAGATACAAAATTTTAACAGTCTTTA 410441 30 100.0 34 .............................. AGCTTAGAAGATATATATAGTAATGATCTATACT 410505 30 100.0 36 .............................. ATAGAGGCGTCCATCTTGTCTGCAGACGACTGCGTA 410571 30 100.0 35 .............................. TTACACTACTTAAATCTTTTACAAGTTTAGTATTA 410636 30 100.0 36 .............................. GGTTCCTAGCTCTTTTCCCAGAGAGTCCAAAGCTCC 410702 30 100.0 36 .............................. AACTAATGTCATTGATATATTGTCTATCTCTTGTCT 410768 30 100.0 37 .............................. TTCAACATGCTATATTATTTAGTAATGTAAACATTAA 410835 30 100.0 36 .............................. AATTATGGCATTTAAAAGTTTAAAACAAATTTCAGC 410901 30 100.0 37 .............................. CGGTCTTTGAACTCGTTGTATATATTAGCCAACTTCT 410968 30 100.0 36 .............................. ACTTAATAGGTATTAACCCCGTAGACCTGTATGCTT 411034 30 100.0 37 .............................. AGAAATTAACGACAGCCGCCCTGCGCGCCATGCCTGT 411101 30 100.0 36 .............................. CCGATTTGGCGGGTGGAAAGTGGCAGGTGGACATAC 411167 30 100.0 36 .............................. AGTTACAAAACGGAAATACAGAAAAAGAATTTTCAT 411233 30 100.0 37 .............................. GACGTTTCCAAGTGGTCGGTATCCACATTCGGAAGCA 411300 30 100.0 36 .............................. ATATAATTGAAGAATATGAAGAAATTAATAATCTAT 411366 30 100.0 34 .............................. AAGATGGTAATATGTTTGCTAACCTTGAAAGCTT 411430 30 100.0 35 .............................. TTTTTCCCTCTTCAAGCTCCTTAAGGTATCCATAA 411495 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 49 30 99.7 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ACACCTGGGGTAGAGCGATATCGTATACGGTGTCGCCCTTCTCCACGGTGACCACGGTTCCGTGCCGCAGCATGGAATCCGGTATCCCTAAGCGCGGCTCCTGAGTGTACAATCGGCTCAAAGCCAACAACTTCAAACCCAACAAAAGCAAGGCTTTTCTATACATGTCTCAAACTTACAAAAAAACGACTGAGACTGCTTATACAATCGCAGCAAAAAAATACAATCGATTGATTTTCAAAATATTCTATACAAACCCACAACTCCGCATCCATCCCGATATTCTTTGTAGACCGTTTCCGGATATTTCCTCATTATCGCCAAAGAAATCCTTTTGACAATGGCCCTCTCCCCAATTATTTTGACTCCAAAATTCCCTGTTCTATAGGCTCAAAAACGTGGCGCGGGAATTTTTTCGGTTTGGTTGGGGAAGTAAAAAATTCTCGTTAAGGAACAATTGAAATGGCATGCAGCGACAAGGTTCTCCGTGACGGAGCTAA # Right flank : TCCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 3 578789-579550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAT01000012.1 Porphyromonas gulae strain COT-052 OH3856 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 578789 36 100.0 30 .................................... ATGTCAAGAAGTCCATCATGATGATTGTTG 578855 36 100.0 30 .................................... CTATCCTAAGCACAGCATACTGTTCAGGAA 578921 36 100.0 30 .................................... AATTTATGTATAAGAGATTTCTCTGCTTAT 578987 36 100.0 30 .................................... GTCGAAAATGGCGATAGTACAGCCCTTGTG 579053 36 100.0 30 .................................... TATCAATACCTACTGACAATATAGAACTCG 579119 36 100.0 30 .................................... TATTTATGAAAAGACACGCAGGGACAATGG 579185 36 100.0 30 .................................... TTCAATTAGGTACATAGCTTCTACTCGGGT 579251 36 100.0 30 .................................... GGCTATATCTATCATACGTAACGCTCAGTG 579317 36 100.0 30 .................................... AGATGAGCCCTCGAATGAGGTTCCGTAGGT 579383 36 100.0 30 .................................... AGCCCTCAGCCGCATAGGCAGTCCCCTTCT 579449 36 100.0 30 .................................... TAGATGGAGAAATAGAGTTCTTGAAGAATA 579515 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Left flank : TTTGTATATATATCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAGATTGCAAGCCCGATTGATATAAATCGGATATTTCAAAAAGCCTTTAGTGGAGGTATAAATAAAGAGGCACCCACCGAGTTCTTGCAGGAACTTGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAATGCCGGTATATAACCACACAGGCCGAACGAAACCGGCCGGATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAGGGAAAGCACTCCCGGCACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGGAAGAATCCCCACGCGCTACTCTCTCCCTCAACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGTGAAAAACAGTCTGTCATCATCATTTAGTGGGATATTAGGATTGAAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTACGTTCCTGCCGGTTCGCACTCAAAAGTTCAAAGTTCGCCCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCGTCCGAGCTATCCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAACACCGTTGCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //