Array 1 2070-1073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMJ010000225.1 Acidithiobacillus caldus strain KU Contig225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2069 28 100.0 33 ............................ GTGGGCATCTCCCAATCGCGCGCGCAGGTGTGC 2008 28 92.9 33 .......................G...T GGCTTCGAGACCGACGCGACCGTGGTGCAGGCC 1947 28 100.0 33 ............................ GGGATCAGCGGCGTACTCATCCACTTGTGGGCC 1886 28 100.0 33 ............................ TTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 1825 28 92.9 27 ..........T........T........ TGATCACCGGGACAAAACCGGGCGGCG 1771 28 89.3 32 ...........A..T..........C.. GCTCCGGACTCCGCTCGTACCCGTCATTCACC 1711 28 96.4 33 .G.......................... TCATCGCTATACCAATGCGCAAGGGGCGGACCC 1650 28 96.4 33 .G.......................... CGCCTTGAGCTCCCTGTTCCGCCATGTGGAGGA 1589 28 96.4 33 .............A.............. GGGCGCTGCGGTGGGGGATGACATTTCCCAAAA 1528 28 96.4 33 .............A.............. GTACGCGGCTCATGCACACCATTCCAGCGATGG 1467 28 100.0 33 ............................ GAGAAAGCAGGAGATTGGAGAGCGTTCTCTATT 1406 28 92.9 33 ..........T..A.............. CCGAGCCAGCACCCGACTCTTGATAGCGAATCT 1345 28 85.7 33 ..A..........AT........G.... GCAACCGTACCGGACCCCGCGCCGCCCACGCTA 1284 28 85.7 33 ..A..........AT........G.... AGTCGATATCAGCGGAAACGCTTCGGACATTGC 1223 28 82.1 33 .C...........AT....A...G.... ACAAGCGGCCAGGTCTCCCGTCATGCTCAAGAA 1162 28 96.4 34 .............A.............. GTACACCATGGCGCAAATAATCGACTTTCTGGCC 1100 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 94.3 33 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : CTTGACCAAGGAGGATGCGGAGGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTACTGGCTGGTCTGCGCTACTTCGCCAGCGATCCGGTCATCGGTGCGCACAAGGCGGTCGGGCGCGGTGAGCTGGCGATGGAACTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGCCCCCAAAGCGCGGAAGCCGGAACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGTCTGCTGGCCGAGCATCTATCCGAATTCGACCGGCTGGCGAAGGCGGGTTTTCCGGGGATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : GGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTAGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCCGCGTGCACCTGCAGGTATTCCTGGTCGTGCTCGACCAGAAGCATCCCGTAAACCTGCAGGGGCTGGCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGACCGTGTTGCGGACGTTTGCCCGAGCACGCGAACACCGTTTTCTTCGAGCATCTGCACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGACCGCTTTTCCATGGTGGCCTCCTTT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 3398-3132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMJ010000225.1 Acidithiobacillus caldus strain KU Contig225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 3397 27 100.0 34 ........................... CGAGGTGCAGTCGAGGCTCCCGCTACCAGCCGAC 3336 27 100.0 34 ........................... CTAATGATGCTGAAAAGTTGGGGCAGGTCTGGTC 3275 27 100.0 34 ........................... CTCCTTGCAGTCCGCATTTCGCATTTGCTGCGTT 3214 27 81.5 28 T......T...A............GG. TTCGCATTTCGCATTTGCCGCGGGCATG A [3198] 3158 27 85.2 0 .............CG.......G.T.. | ========== ====== ====== ====== =========================== ================================== ================== 5 27 93.3 33 GTCGTCCCCGCGTGTGCGGGGGAAATC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGTCGGTACAAGGCTTTTGGCTGCGGAATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGTCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGG # Right flank : GCACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGGACCATACGGGTGGTGCAGGAAGCCATGAAAGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGGAACCCTCCCAGGCCGGAGCAACGGCAAAATGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGATCCCCAACGCGCAGGGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //