Array 1 42893-43777 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZOX01000013.1 Edwardsiella anguillarum strain CCUG 64215 contig_0000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 42893 28 100.0 34 ............................ TGGACTATGAAGCGGTAGAACGCTGGGTCTGTGA 42955 28 100.0 34 ............................ CCCCGTAAGTCCATTAATGATCACAGAGCACCTA 43017 28 100.0 33 ............................ CGTTTCAAAGTCGAGGGTTTCCACCGTATCGGG 43078 28 100.0 33 ............................ CCCTGCATCGGTACATGACAAAGACTGAAGCGG 43139 28 100.0 33 ............................ TGCCTTCAATGGCCGCCGCATTCTCTTGACCAG 43200 28 100.0 33 ............................ TTCGGCCTTAGCCCTGGCAGCGGGCAACGTAGA 43261 28 100.0 33 ............................ TGTCTTATCGGTGGCACCGCCAGATGCTTCCCG 43322 28 100.0 33 ............................ CGATTGTCCCTGATGCCGCCAACTCTTTCCCAT 43383 28 100.0 33 ............................ TGGCTATGAAAACGTGTTCCCGGTGTATGGCTC 43444 28 100.0 33 ............................ TGCCGATGTATTCGACGTTGTATTTTTCGGTAA 43505 28 100.0 33 ............................ TGACTGCGTAGATAGAGCACTGTGCAGCATCGA 43566 28 100.0 34 ............................ CTACCAGCCAGCCCGGACAGGTCCAGCTTGAGGA 43628 28 100.0 33 ............................ CTTTATTCTGGGCCGTAGCGCTGCTGGAACGCT 43689 28 100.0 33 ............................ TAGCCCGGAAGGTTGGGAGAGTACGCTATGAAA 43750 28 92.9 0 ..C........................A | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.5 33 GTTTTCCCCACGCCTGTGGGGGTGTTTC # Left flank : TTGTCGTGGCGCTTGATGAAGTACTCGGCTACAGCCTGAGAGGTGGTAACAGCTTTGCCATCGTGAATGGTTACACTGGGGGTGTGTACAGAAAGCCGATGAGTCATTTTTCTGTGTCCTACGTATATGTTCAAATTTACCCTGTGTTCAGCAGGGCGGTCGGGTACTTGAACACCGTACGTAGTCGGCCAGCAGTTTTTCCCTTACGGGTGTTGTATGGTCTGCTCGCTACCCGGCCATATCTGAAAGTATGGACACAAAAAAAACCGCATTGCTGTCGGGTGCGGAGGCCGCTACGTAAGGTGTGTTCAGCACCTGAGCGGACTATACTCCCGGCATCGCGGGTAAAACTAATTTCGATTTATGATACTTTACTTACAAATCATAGGAATTCAATGAATCATTCTAGCCTGACCATACAGAGCCCCATCTGGCTATTCGACCAGTAAACCAACCACAATCTGTAGCTGGTTTAGTATGTTCTTTAACAATATAATGGG # Right flank : AATAGGAAACTGACCGAGTCACATATCAAGGCCAATAAAACCAGGCTGCTGGCTATGTGGCAATCAGCGGCGCGATTTTGGCTATCGTGCGGGAAAATAACGCACAGCTCGGTTAAGGGCTTACTGTGCGCCGTCAAGCGCCGCCCTTCAGAGCGGGGGGATACTCACTCTCATCACTAGGATCACCACTGATGAAGGTACTGGCCTCCTGAAACGACCGGAACACAGGTCATTTAGTGATATCCATCTAACTTACTGAAATACAACTAATCGATATCAAATAAAGATCGAGGGAATCCATTATTATTAGGGAGCCCCATAGCGGTTAAATTACACCCAGGCAAACGAGGTTTATCATTATCAATAAGATCGGCAATATTTCTAATCCATTTTGAGCCAGGGCCGATTTTTTTCACCAAAAACCATAGCACAGCTATCATCCCATACATTCTTTCGTAGGCATCATCATTCATACTCAATCGCTCAAAGTATGGGTAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGCCTGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11865-12746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZOX01000024.1 Edwardsiella anguillarum strain CCUG 64215 contig_0000024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11865 28 100.0 33 ............................ CTCGGCATGATTACCGATAGCGATAAAGCTGCT 11926 28 100.0 34 ............................ TTCCGGGCAGGACGACCACTTCACGGCTGATGTA 11988 28 100.0 33 ............................ TGCTTATGGAGCCGGAAACATGCGCGTACTAAA 12049 28 100.0 33 ............................ TGCAACTACTCAACATCGTAGCGCCGAAAGGAA 12110 28 100.0 33 ............................ TCAGCAGCACACCAATGATCCACTCAATGTGAC 12171 28 100.0 33 ............................ TCTGGCCCACGAAAAAACACCCTGGCGCCGGGG 12232 28 100.0 33 ............................ CGTTTGGTGATGTTAGTTGCGCTGATCGTCTCC 12293 28 100.0 33 ............................ TCGCCGACAGCGCACTCAGCGCCGACGCGGCCT 12354 28 100.0 33 ............................ TCGTTGAGCCAGTCTTTTTCCATGTATGTGCCG 12415 28 100.0 33 ............................ CGACGCTTTAAGCTCTACACCGGTCGCCTGAGC 12476 28 100.0 33 ............................ TGATTGATGGCTGTGTAGCGCGGTTACGTAAAT 12537 28 100.0 33 ............................ CAATCGGCAACGATCCAAAATGGTTGTCATGAG 12598 28 100.0 33 ............................ CGTACAAGGCGCTGTTAGCCGGAACCAAATTGC 12659 28 100.0 33 ............................ TCTCACACCTATCTGTCCGGCAACATCGAGTGC 12720 27 92.9 0 ................-A.......... | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.5 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : GAACCTCTGTATCGATCTTGCCTTCTCCCTGACGCGTGAGATGGCGGGTCGTTATGAGAAGGCTCTGGTTTCATCTCGTTTTCGAGAGCGGGTGATAGAACTGAATTTGCTCGCGAGTGTAGCCAGAGATATACCACAGCTACTTGGAGGGGCAAATATTGATGCTGATAGTGCTAGCTAACGATTTACCTCCAGCAGTTCGAGGACGAATGAAACTTTGGTTTATTGAACCGCGGCCAAATACCTTCGTTTCCGGTATCAAGGATTCGGTTGCTGACACAGTGATCGAATACCTTTATCAACACTGCTCACCGGCAGCGGGTGTGGTGATATTTAAAAGCATTGCTAGAACACCGGGATATCAGATCCATACCATAGGATCACCGACTAAGACGCTCTGTGAGATCAATGGCCTGCAGTTGGTGATAGAAAAGCGACTCGAGCAGTAAGTTAACCACAATATGTAGTTGGTTTAGTATGCTCTTTAACAATATAATGGG # Right flank : CCAAAAGTCAGCCAGTGAACCGTCTCGGTTTTGTGGGAGAGCGTTAAGTCCGGGAGTTCAGGCTGCCATAGCCTCGTTCCCGATGGGAGCGTAATACACTTTTTCTGCCTCAGCGGGTGGGATGTGACTCAGCCGCTCAAGCAACCGACGATTGTTGTACCAGTCCACCCACGCCAGTGTGGCCAGCGCCACTTCCTGCCAGTTTCTCCAGCTCTGTCGGTGTTTTGTACAGACCGTTGATACTTTCGGCCATGGCATTATCATAAGAGTCACCCGTACTGCCCGTTGAAGCTAGAAGCTCCGCCTCCTGTAGCCGCTGTGTGTACGCTAGCGATACGTACTATGAGCCTTTGTCGCTGTGATGAAGGGGGGCTGATGGCCGACGGGCCCACAGCGCCAGCTCCAGCGCGTCCAGTACGAACGCTGTCTCTTGGTCAGTGAAGCCTGGATCGCCAGTGGGGGTTCCGCCGGTGTCAGAAGCATCGCCACGATGGTCACTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //