Array 1 385420-384922 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEKM01000002.1 Prevotella intermedia strain KCOM 1101 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 385419 36 94.4 30 ..G.........C....................... AATAACAATCCGCTATTTTATAATCTTTTC 385353 36 100.0 28 .................................... GTTCGATACGTGTTAAGCCTTTTAACGT 385289 36 100.0 30 .................................... TAGGTATCAAAGCTTTGCGACAAAGGCTTT 385223 36 100.0 30 .................................... GCATACCCTCTGCGGAAGACAGTCTGTAAA 385157 36 100.0 30 .................................... TATTATTAGGAACACCTGAAGCATCACCTA 385091 36 100.0 30 .................................... TTGCGACTGCAAAACTCCCCATGAAGGAAA 385025 36 100.0 30 .................................... TTCATCGGTTCACCCCCTTCGCTTTTAACT TT [385004] 384957 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TGAGAACATGGTTTTCATGATGGTTACCGCCATGCTGAAGAACTTCTATCTCTATCTCGTCCGTCATATCAGCGAAAAGGTCAAGCCATTGAAAAAGACAAGCAGGCTGAAAGCCTTTATCCTCCATTTTGTCAGCGTGCCAGCAAAATGGGTGAGAACGGGAAGGCAGAACGTTCTGAACCTGTATACAAATAAAACCTACTACTCAGAAGTCTTCCTTGAATAAACAGTATTTCTTTGTGGTTTTAATATTCCCCATTGGTTTGGGTGGGGGATTTTATGCTTAGAAAAAAAACAAGAAACACCGAAGCACCTCATATCAACATATAGAGTCCCAAAAAGACACCTCAACATATAAAATTTTCTCACAAGAAAAAATACTGCGGAATTAAGGTAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTAAAAAGAAAGAAACAAAACATATAAGAATCAGAAAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAATGGAAGGGGGAACACACCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATAATTTTCACAAGCGAAACTATTGCGTAACTATCTCTCTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGTTTTTTCTATGGAATTATCTTTACAAAATCGGAGTGGTTTTACGTCGTGGAAGGTGTAGAGGTTGTGGCGTGGGTCGGACGGTAGCACAATGGCGGCTTTGCCGATAGTGCGACATCGGCAAGGGTGGTTGGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCAGTTGTATTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCGTATCGTTATAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 242174-240902 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEKM01000001.1 Prevotella intermedia strain KCOM 1101 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 242173 47 100.0 30 ............................................... TGTTGACAAGCTCGCAGCTTACACGTGTCT 242096 47 100.0 29 ............................................... TTAGGTTATAAGTATTTTATTTGTATGGA 242020 47 100.0 30 ............................................... TTACATACTCTTTGATACGATTTCCTATCA 241943 47 100.0 30 ............................................... GACACTTTCGAAGATGAGACGGACAATAAC 241866 47 100.0 30 ............................................... TGAAGTAACCAACGAAGCTAACGACCCCTA 241789 47 100.0 30 ............................................... TGCCACGTTATTCGATGTACAAGCACAAGA 241712 47 100.0 30 ............................................... CTTAATGGCGATATGTCTTTACGCTCTCGT 241635 47 100.0 29 ............................................... TTTAAGTATGCTAGTTAGTGGTGCTTTTG 241559 47 100.0 30 ............................................... TCGCTTGTTCAATTTCAGACGCTTAGACGT 241482 47 100.0 29 ............................................... CAGAATGTTAGTTCCAATGCTGCGCAACA 241406 47 100.0 29 ............................................... CAGAATGTTAGTTCCAATGCTGCGCAACA 241330 47 100.0 29 ............................................... ACATCTAAAGCCTTTCCGATTTCTTGTGC 241254 47 100.0 30 ............................................... TTGTGCTTTCAATGCGAAATACTTCTGCGA 241177 47 100.0 30 ............................................... TCGTTCAAAGCGTCTTACAAATGCTGAAAA 241100 47 100.0 29 ............................................... ACCCGTGGCACGTGCCCATTCGGCATAAA 241024 47 100.0 30 ............................................... TTGGTAACGATGATAACTTCCGCGAGTTGG 240947 46 95.7 0 .....................................-...T..... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 99.7 30 GTTGTATTTACTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGATTGGTTTATCCAGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATCAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGTAAGAAACCACAAAAACCAAATGCACCTGGAGCACAATTAGAGCTCTTTTAATCCTTCTTTTAGAAACAATAAAGTTCCATTCTTAACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAATCTTTCGTAACAACGCTGATGTTCATCACTTTAATCCATTTGA # Right flank : TAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGGGGTGGAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAAGTTTTACCGCGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGATGGAATGAAAAATATAGCCTATATGCGAATAAAAGTGTTCGTTTTGCGACGTAAAAGGTATGGTTTCATTGCATAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGACGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGGGGCTTTGAAATTTAACAGTTTCGGAGTCGTTTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //