Array 1 48-1187 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACEQ02000077.1 Neisseria lactamica ATCC 23970 N_lactamica-1.0.2_Cont76.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 48 32 100.0 34 ................................ ATCAAGCCCTATATCCAAGAAACAATAAACCACT 114 32 100.0 34 ................................ ACACATGCAAAGCAGCTTGTAGCCTATCTAGGAC 180 32 100.0 35 ................................ AAAAAACCATACCGACCCCCACGGCGCAGCAGGAA 247 32 100.0 34 ................................ AGTTGACGGCGTATGCCCCGAACCTAAAAGCGTA 313 32 100.0 35 ................................ CTTGTCTTAATAGTAACAACTGCATTGAGACCGTA 380 32 100.0 33 ................................ TTTTGAACAACGTTTTAAAACAACAGAGCAGGA 445 32 100.0 34 ................................ CGTCTTCGCCGCGCTGAAAAACGCTTATTTCGCC 511 32 100.0 35 ................................ CATAATCGGCGGTTTTGTTCGATGCTCCGCTTGGA 578 32 100.0 34 ................................ GTTCCGTGGTCGGCAATCTGTCCCTGATTGTAGA 644 32 100.0 34 ................................ GTCCCATTTATAGTCGGAATTTGTCCTATCATAG 710 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 776 32 100.0 34 ................................ AACAAACCAACCAACGAGTGTGCGGCATATCGGG 842 32 100.0 22 ................................ AAAATAACCTTTGAAAGGCAGA Deletion [896] 896 32 100.0 34 ................................ AGCGCAGCCGTAGTCAACGCAGCGGCAGCCAAGG 962 32 100.0 34 ................................ ATCAAGCCCTATATCCAAGAAACAATAAACCACT 1028 32 100.0 34 ................................ ACACATGCAAAGCAGCTTGTAGCCTATCTAGGAC 1094 32 100.0 30 ................................ AAAACCATACGACCCACGGCGCAGCAGGAA 1156 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 18 32 100.0 33 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTGTTGAAACAGCGCAGCCGTAGTCAACGCAGCGGCAGCCAAGGT # Right flank : AGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 525-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACEQ02000098.1 Neisseria lactamica ATCC 23970 N_lactamica-1.0.2_Cont99.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 524 32 100.0 34 ................................ CCGCCACAAATACCACCACCGCCTCGCTGCCCAC 458 32 100.0 34 ................................ AACGAAATCAACAATTATCTCGGCGGCTTTGGTA 392 32 100.0 34 ................................ TTTGCCAGTCAAACAATGTTGGCAGTGGTGGGCG 326 32 100.0 34 ................................ CGGCGCGGGAATGGGTGCCGGGCGGAAATATTTG 260 32 100.0 35 ................................ GTATTGAAGAAACCGGTTACAGATACGCAGCAAAC 193 32 100.0 34 ................................ CATGAAAAAACCTTTTTCGATAAATACGGCGTTC 127 32 100.0 35 ................................ TAGCACTAGAAGTTGATTTAAGCGTCTTTAAAGGC 60 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : AGTTCGGTGGCGCGTTGCTCAATACGG # Right flank : CGATACGGGGGCGGTAGTCGTCCTCTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 385-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACEQ02000069.1 Neisseria lactamica ATCC 23970 N_lactamica-1.0.2_Cont68.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 384 32 100.0 35 ................................ CAGAAAAAAGAGAAATAATCAATAACATTTTCAAG 317 32 100.0 35 ................................ AGTAGTAGAGCTGCCAAATGCGTTGCCTTGGGAGC 250 32 100.0 34 ................................ TTAGGGACGAAATATATAAGATACTACTTTAATT 184 32 100.0 35 ................................ AATTTTAGCCGCCCCGCAAACCTAGAGGAGCAAGC 117 32 100.0 34 ................................ TATAGATTGGTTGTCATTCACGATGCACGAAGAT 51 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CCGCCAGCAGTTCGGTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38-400 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACEQ02000053.1 Neisseria lactamica ATCC 23970 N_lactamica-1.0.2_Cont52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 38 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 104 32 100.0 34 ................................ AACAAAACCAACCAACGAGTGTGCGGCATATCGG 170 32 100.0 35 ................................ AAAATAACCTTTGAAAGGCAGAAACATGAACAAGC 237 32 100.0 34 ................................ AGACGCACGCCCGAAGCATCAACGGCTTGGAGGC 303 32 100.0 34 ................................ CGACAGACGGGGAAGCACCGCCCCCCAGTGTCCC 369 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : AACGTCCCATTTATAGTCGGAATTTGTCCTATCATAGT # Right flank : CGGCGAGGACGACATCCGCTTCCTGCGGGAACTGGGTTTGTAAACCTTTAAAGGACAATCTGATTCCCCTACGGCTTCAAACCCTGTCGGGGCCGACGCAAAAATGCCGTCTGAACTTGGTTTTAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGAGCAAACCCCGGCAGGTTTCAAACCGTCCAATCCTGCGGATAAGCCCGCTCCGGCTCCTGCCAAACCTTCTAAAGAAACCACGCCGGTCAACCAGCCCGCCGTTGGTGCGGCAATGCGGCTGCCAAGGCGGAATATCGCTTCCTATAAAAAAGACGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7945-7383 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACEQ02000049.1 Neisseria lactamica ATCC 23970 N_lactamica-1.0.2_Cont48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7944 36 100.0 30 .................................... GTAGGGAGTAACGAGCCTGATGAAGTAGGT 7878 36 100.0 30 .................................... CCCTGACGCTCAATTTTCCCTGCCATACAG 7812 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 7746 36 100.0 29 .................................... TCGGGATTGACATTATAGAAAATAACATG 7681 36 100.0 30 .................................... CGAACTTCATTGATGTTGCGTGCGATAACA 7615 36 100.0 29 .................................... TCTTTTGGATACCCCTTGCCGCCCTGCAA 7550 36 100.0 29 .................................... CGACGACGTTGCCGATGGATTTCGACATT 7485 36 100.0 30 .................................... TAGGGAGTAACGAGCCTGATGAAGTAGGTG 7419 36 86.1 0 .........................G....AA..AT | T [7389] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.5 30 ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Left flank : GCGAAATGAGAAAGAATAAGGATTCAGTGTCAGCAGCAGCTTGTTCCCCTGTAC # Right flank : GCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAAGGCTTTCACGGTTGCATCCCTTATCCATCAGTTCTTTAACAAACAATATGCCGTATTCATACTCTTCGTTTTCGGTCTTTTGTTTCAAAGTCGGATTGCAGATATAAAAAGAAACTGTTGTGATGCATTGGGATTCGTAGACTTTATCCTTGAACACTTTCATGATGTATGCTTTGTGGAAATATACGTGTTCGGGATTGACATTATAGAAAATAAACATGATTAAGCCCCTTCACTGGCTAGAGTTAAGGGGCTTTACAAGGATTAAAAATATGCGCCCCTTATGGAGCGCAATATATAAGGGAGCTACAACTAATATATAAGGAACTTTATGAGATAGGTTCAGGGCGCGAGAGGCGCGGATTTTAAAAAATCGGCGGGGACAAACAAAAATCCCCAAGCTGAGAACAAGGGGATTTTTGCATTCCTGCCAAGTTTTGAAACTTACAGGAAACATC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1-216 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACEQ02000033.1 Neisseria lactamica ATCC 23970 N_lactamica-1.0.2_Cont32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 22 47.2 29 --------------.TCTCA................ CATGTTATTTCTATAATGTCAATCCCCGA 52 34 91.7 29 ..........C--....................... GAAGCGTTCCGACAGGCTTCTCCGTCTTT 115 36 100.0 30 .................................... CAAAATCACTTTAATCAGCACCGACAACGA 181 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 84.7 30 GAATCCTTATTCTTTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : TACTTCGACGGGGAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTCTTGGGTTTTCAGTTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCCTTATTCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.09%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //