Array 1 145-477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAC01000010.1 Azotobacter chroococcum subsp. isscasi strain P205 NODE_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 145 28 100.0 33 ............................ CTGGGCGCGCGAGTGGGATGAGTTCATCGAGCG 206 28 100.0 33 ............................ CCGTTGAGTGCCGCCTGCCTGGCGACATCGGCC 267 28 100.0 33 ............................ CCAGTATGTGTCCTACGGCGGCCAGTTCTATCG 328 28 100.0 33 ............................ CGAGCCCGACAACATGCTCGGCACGCCGCGCAA 389 28 100.0 33 ............................ CCATAGAACGCCGCCGGCCGGGGGTCTGGAAGA 450 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CACCAGCCTGCTGGAGGGGGTGAACAACCGGATCAAGGTAATCAAGCGCATGGCCTATGGCTTCAGGGACTCCGATTACTTTTTCCTGAAAATCAAGGCCGCCTTCCCCGGGAAAATGCGATGAACCAAAAAAGAAGGCCCGCAG # Right flank : CCGGGGCCGTCCAGTCCAGTCCGGTTCGGCCGCCCCGCCACCGCAGGGCAATCGCATGAAGCGAAATGTCGGTATGCATACGTCCCTGTAGGAGCGGATTCATCCGCGACCGCCCCGCATGCGGGACGTAGACGTTCAACGATTTGCCGCATCTATGGTGCAGGTCGCGAATGAATTCGCTCCTTGTATCTCGACTGCCCTGCCCGCCACCGGTCGTTCCCATCGGTAGGTGCCTTGGAAGCGTCCATACTGAAAGGCGGAGCTTGACTCTGGTATCCAGCAACCTGTGCAAAGGTGAATGAATATTGGTGATTGTGATGAACACCCCCCAGCAGAGCAGCCAGGATGCATTTCGATGCACCTGACCCACAAGATCGCCCTGCGCCCGACTCCCGAGCAGGCGGACTACTTCGCCCGAGCCTGTGGTACGGCTCGAAAAGTGTGGAACTGGGCACTGAACGAGTGGAGCAAGCAGTACGCTGGGGGTGGCAAGCCGAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89497-90257 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAC01000008.1 Azotobacter chroococcum subsp. isscasi strain P205 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 89497 28 100.0 33 ............................ CGCCCAGCCGCGCCTGCTGATCGCTCCCGGTTT 89558 28 100.0 34 ............................ CAGATCGCAGGCTGGGTCCCTGGCCTGCACGATG 89620 28 100.0 33 ............................ TCGACCGCGAGCTGACGATCAGTTTCGGTGGGC 89681 28 100.0 33 ............................ TGGAGAACGGCGAGAAGGTTCAAGCCATCGATG 89742 28 100.0 33 ............................ CCAGATCAAGGTCAAGATCGAGGCGGCGACGAC 89803 28 100.0 33 ............................ CGAAAGTCAGCCGATGTTCGGTGTTCGCGATCC 89864 28 100.0 33 ............................ TGGCACCTTCAGGGGCGCCTTCAAGGACCTGAA 89925 28 100.0 33 ............................ TGCAGCGCCGTGGGCTTTGCGACCAGAATGCCG 89986 28 100.0 33 ............................ TCATGGCTGACGGCACCCAGAAGCGCGGGCACC 90047 28 100.0 33 ............................ TAACGGGGCCGGCACGGAGCAGTTCAGCGCCGC 90108 28 100.0 33 ............................ CGACGAGACGGCCATGCTGATCGATCGGTTGGT 90169 28 100.0 33 ............................ TGACGCCTACGACCGGCGCACGATCCCGATGGA 90230 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TCTACAAGGAACAGCTGTGCATCGACCTGGCCTTCTCGCTCACCCGCGAGCTGGCGGGCCGCTATGACAAGCACAAGGTCTCCGCCGGGTTTCGTCGCCGGGTGCTGGAAATGGATCTGCTGGCCAAGGTGGGCGACGACATCCTGGACATCTTCGGAGTGAGCCGTGCTCGTCGTAATCGCAAATGACCTGCCGCCCGCCGTGCGCGGACGCATGAAGCTCTGGTTCGTCGAACCCAGGCCCAACGTCTTCGTCTCCGGCCTCAAGGATTCGGTCGCCATCACGGTCGTCGACTACCTGTACAAGCACTGCCCGCCCGATTCCGGGCTGGTGATCTTCCGCTCCCTGCCACATCCGCCCGGCTACGAAATCAGGACCATCGGCCCGCCCCGAAAACCGATGACGACCCTCTCCGGCCTGCAGCTCGTCATCGAAACCCTGACGCAGGCGTAATCGGCAGATCTTGTGTCTGCAGCCTGGCTCATTAACAATCTGTTGGT # Right flank : CCCTGTAGCCCTCCCAAAAAAAGAGGTTCTTCGCGGGATCGTGGGGAAGAGCGGATTGACAGACAGGGAAGCAGGTAAATTGGCAGTCGCCAAACACACCAACGCCTGCCCCCTGCTGTCACCGTGCATCCTATTGATCTTGCTGCTTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 133165-134842 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAC01000054.1 Azotobacter chroococcum subsp. isscasi strain P205 NODE_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 133165 29 100.0 32 ............................. GTTGAACTGGGGGCGCTGATTGAGCAGCTGCT 133226 29 100.0 32 ............................. GCGGCATGGGGGATGCGCGTGTCACGCATCTT 133287 29 100.0 32 ............................. CAGTTCCGCTTGTTCTGGAGTCGGGTAGAAGC 133348 29 100.0 32 ............................. TTGCTGCCGTTGGACTTTCGCTTTGCCACGCG 133409 29 100.0 32 ............................. CAGACCAACTTCGACAGCGCCTTTCCCTATCC 133470 29 100.0 32 ............................. GAATGGGTGCCGTGCGTGCGTTCCGGCTGATG 133531 29 100.0 32 ............................. GCGGTGGCCAACCGCGGCGAGCATGTGCACCA 133592 29 100.0 33 ............................. CCTAGCGATGGACGCCTGCATCCGCTGCGGCGC 133654 29 100.0 33 ............................. GGGGTGACCTACTCGACGCATGTCGTGCCAGGC 133716 29 100.0 32 ............................. TGCATCGGCGAAAGCAATCAGGTCGCCATCAC 133777 29 100.0 33 ............................. GCCGAGCTGAAGCGCGAGCTGCTGCCGGCCTAC 133839 29 100.0 32 ............................. TGATGACCTGCGACTCTCCCGGCGCCAGCGAT 133900 29 100.0 32 ............................. GTATAACGGTCGCCCACCTGGATCTTGATCGG 133961 29 100.0 32 ............................. GTCGCGAGCTTGATGCTGTGCTTTTCGATGGC 134022 29 100.0 32 ............................. AACTCTTTAATGACCTCGTCTCTACACCACAG 134083 29 100.0 32 ............................. GCCGTGTTGGCGATCTGGGTGGTGTTGGTCCC 134144 29 100.0 32 ............................. CGATGCTGCCGGCGCGCTCCTTGGCCTGCGCG 134205 29 96.6 33 ............................A GACTCGGCTGGCGACATCTCTCGCCGGCGTGTC 134267 29 100.0 32 ............................. ATCCGTTGCACGGTCGTGTTCGTGCTTGATGG 134328 29 100.0 32 ............................. GAAACGCTCAATGACGCGCTGGCCGCCGGCTT 134389 29 100.0 32 ............................. TCGAGATGTCGATCGGCGACTCGGTCTGGCTC 134450 29 100.0 33 ............................. CACTCCGCAGATAGTGGCCTCCCGCTACTGTCC 134512 29 100.0 33 ............................. GACGAGCGCGCCTGCGACCGCCGCAACGCCGCC 134574 29 96.6 32 ............C................ GACATCAGGGACTGGCGCAGCACGCCGGCACC 134635 29 72.4 89 ........T...C.C..A......GTT.A ACGAAGGTCTTTGTCGGACTTTCCGACAAATGGCACCTCCTTGCCTGTCCCGGGCAGTGGGGGCTGTAGCTCTGCCAATATATTCTTTG 134753 29 82.8 32 .CTA......GC................. GGACACCCTGCGACCATGCGCGTAGCCAACGA 134814 29 72.4 0 .CA........T.TC......CC..T... | ========== ====== ====== ====== ============================= ========================================================================================= ================== 27 29 97.1 34 GTGTTCCCCGCGTCTGCGGGGATGAACCG # Left flank : GGCCAGGATCATCCCGACCATCGAGGAGGTGCTGGCCGCCGGCGGCATCGCCCCGCCCGAAGCGCCGCCGGAATCCGTGCCGCCGGCCATTCCCAACCCGCAAGGCATCGGCGACGCCGGGCACAGGACGCAGTGATGGCCTTCGTCGTCGTGGTCACCGAAAACGTCCCGCCGCGCCTGCGCGGGCGCATGGCCATCTGGCTGCTGGAGGTGCGCGCCGGCGTCTATATCGGCGACGTATCCCGGCGCACCCGGGAAATGATCTGGCAGCATCTGGCGGAGGGGCACGAGGACGGCAACGTGGTCATGGCCTGGGCGAGCAACCACGAGTCCGGCTACGAGTTCCAGACGCTGGGGAAAAACCGGCGCTTGCCGGTCGAGTTCGACGGCCTGCATCTGGTCGCCTTCCAGCCCCAAGAAAAGCCAGATCTTTAACAAGAAAATTCGGTAGATTTTTGGCGGCGGATTTTTTCCTTTGGAGACAATCGGTTACGCTAAGT # Right flank : GCAGGGCCGGTGGATCGGGCAGGCCGCGCGAGCGGTCTGTCCGATTCGTCTTTCTCTCCCTTGTCGTTTCCCTGAGAACGTCGCTCAGCGCGGGCCGATTTCCCGGCGCAGGGCGGCGAGGCTGCGCCGGTGGGCGAGTTCGGCCGCAGCCTGGTCGTAGTGCCGGCTGCCTGTGCGGGCGAAGGCGTGCTCGCAGCCGGGGTAGCTGTACAGCTCGATGTTCGGCCTGCCGCCCAGACCGGCCAGGAGTGCGGCGCGGGCCTCGGCCGGGCAGAAGGCGTCCGCCTCGGCGATGTGCAGCACCAGCCGGCCGCGGATGCTGGCGGCCTCGTCCAGCAGATGTTCGATGCCGACCCCGTAGTAGCCGATGGCGCAGGCGACGTCGCTGCGGGCGGCGCTCAGATAGGCGAGCCGGCCGCCCAGACAGAAGCCGACGAAGCCGGCACCGGCCGTGGCGTCCACCTCGGGCATCCGGCGCGCCGCGTCGAGGGTGGCGCCGA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //