Array 1 163391-161304 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMJ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10330 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163390 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163329 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163268 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163207 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163146 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163085 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163024 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162962 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162901 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162840 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162779 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162718 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162657 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162596 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162535 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162474 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162413 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162352 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162291 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162230 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162169 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162108 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162047 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161985 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161882 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161821 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161760 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161699 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161638 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161577 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161516 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161455 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161394 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161333 29 96.6 0 A............................ | A [161306] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181015-179522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMJ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10330 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181014 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180953 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180892 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180831 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180770 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180709 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180648 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180587 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180526 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180465 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180404 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180343 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180282 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180221 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180160 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180099 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180037 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179976 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179915 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179854 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179793 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179732 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179671 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179610 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179549 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //