Array 1 61655-60406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRN01000006.1 Escherichia coli 2-474-04_S4_C3 e247404S4C3.contig.5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61654 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 61593 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 61532 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 61471 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 61410 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 61349 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 61288 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 61227 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 61166 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 61105 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 61044 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 60983 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 60922 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 60861 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 60800 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 60739 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 60678 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 60617 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 60556 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 60495 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 60434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88179-87357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRN01000006.1 Escherichia coli 2-474-04_S4_C3 e247404S4C3.contig.5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88178 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 88117 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 88056 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 87995 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 87934 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 87873 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 87812 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 87751 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 87690 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 87629 29 100.0 32 ............................. ACTGGTTTTGTAACCCAAATTTGGGATCATTC 87568 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 87507 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 87446 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 87385 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //