Array 1 12823-14118 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFVB01000023.1 Escherichia coli strain JML281 sequence023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12823 28 100.0 33 ............................ ATTACCCAGGAAGAGCCGAAATATGGCGATAAC 12884 28 100.0 32 ............................ ACGGCGCACCCGTAAATACACAACAGATAAAA 12944 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 13005 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 13066 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 13126 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 13187 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 13247 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 13307 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 13367 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 13427 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 13487 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 13547 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 13607 28 100.0 32 ............................ CAGTCCAGAACCTCGTCAGCGACGGTACTCGC 13667 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 13727 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 13787 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 13849 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 13909 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 13969 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 14029 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 14089 28 85.7 0 ....................A...C.CT | T,C [14109,14113] ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23726-23972 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFVB01000023.1 Escherichia coli strain JML281 sequence023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 23726 28 92.9 32 NN.......................... GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 23786 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 23846 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 23945 27 85.7 0 ...G...A...............-C... | T [23965] ========== ====== ====== ====== ============================ ======================================================================= ================== 4 28 94.6 45 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGAAGTGGCAGTTCACTGCCGTACAGGCAGCTTAGAAATTTACGCCGTCCATCTCCCATATTCCAACATCGTTCACTGCCGTACAGGCAGCTTAGAAAGCCATGACGTTTACTCCAGCTCTCGTCAGTAAGTTCACTGCCGTACAGGCAGCTTAGAAACGCGCACGTCGTCATTTAATACGTCATCAAATGTTCACTGCCGTACAGGCAGCTTAGAAAACGCCCAGCGACTGACACCGATTGTGGTCCCGGTTCACTGCCGTACAGGCAGCTTAGAAAGCTGGCGTAACTCGTCCAGCGTTTCGAATAATGTTCACTGCCGTACAGGCAGCTTAGAAATGCTAAATTTTTTAATGCTGCCATTTGTTAGCGTTCACTGCCGTACAGGCAGCTTAGAAAGTACACATTCGCAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 4.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-1.14, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //