Array 1 20813-20118 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFOE01000091.1 Campylobacter jejuni strain isolate_S4 NODE_2_length_80519_cov_60.639427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20812 36 100.0 30 .................................... CACAAGTTCCAAACAATTTTGAAGAAGTAA 20746 36 100.0 30 .................................... AGAGCAGTAGAAGCAAGTTGCACGGTATCG 20680 36 100.0 30 .................................... CCTTTACATCTTTGGTATTTAAGTATAGAA 20614 36 100.0 30 .................................... AAATCACCCTTTAATAACAGCATAAATGTA 20548 36 100.0 29 .................................... TAATCGCAACAGAAGGCTTTGATAGATTT 20483 36 100.0 30 .................................... TTTGTTGGTGATAATTCTATTGGTCAAGCT 20417 36 100.0 31 .................................... ATCGCCAAAATGTCCAAGACTATCGCCAAGA 20350 36 100.0 30 .................................... ATAAGTTATCAAAAAAACAAAAAAGGACAA 20284 36 100.0 29 .................................... CTATACAAGCAAGACGCGGTATTCCTAAG 20219 36 100.0 30 .................................... TTTAAAATTGCTAGCACTCCTGTTATAGTA 20153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTAGGCATAGGAACTTTAATCTTGCTTGCAATTTTACTTTTCTTAGTTTCTATAAAAATCATCGATCAGTATGAAAAACAAACAGGCATACACGATGATAAACATATTGTAATAGATGAGGTTGTAGGGGTATTTTTAGCCTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATTACAAAACCTTCTATCATAGGTAAAATTGACAAAAAAACCAAAGGTGGTTTAGGTGTAATGCTAGATGATGTTTTAGCGGGGATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTGCTTAAATTTGATCTTTTGTGGTTTGATATAAGCATTATGGAAATATTTTAGCTTCATAAATTTGTGAAGCTATTTTCTAATTTTCTTTAGAGCAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : AGATCTTTATCAAATAAAGAAAACTAGGTGTTTTTCTATGGAAAAAGATCTAAAATATGCTATAATTCTTGCTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTACAATCCCTTTAAAACCATTAAAATTCAAATAAACTAGGTTATATAAACTTGGTTTTTTTCCTTTCTTTGTTTATTTTTTCATTGCCATATTTAAAATCTTTACTTTTTTCATCATATTCAAATAAAACTAGATTTTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAATAAAATTTGCATATTATCAAATTGTTTTTCTGTTATGGTTAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTCTCTATCGATTTTATCGTTGTTTTTGCCGAAACCGATCCTTTACAAATTTTCACATACACACTAAATTGCATCATGAAAAATCCAAGCTTTATCAATGAGTTTCTAAATTTATTTGCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 56677-57916 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFOE01000084.1 Campylobacter jejuni strain isolate_S4 NODE_11_length_75153_cov_53.180710, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 56677 37 100.0 37 ..................................... ACTCTGCAGTATTTTTGGCATTGTTGTCCTTTCTGAA 56751 37 100.0 35 ..................................... GTAGCTCTCTACTCATCCTAGCTAGATTTGAAAAG 56823 37 100.0 39 ..................................... TACGCTAGCTGATAATACGCTTTGAACCTCTTTATCTAT 56899 37 100.0 33 ..................................... AAGATAAGATTTCCATTTTTTTACTCCTATTGA 56969 37 100.0 43 ..................................... ATATACAGTTACTTTATTGGAATCTTTAAGGAAGGTAAGGAGG 57049 37 100.0 34 ..................................... ATTTCAGATTCTTTACCAACTTCATAATCAATAT 57120 37 100.0 36 ..................................... ATTATTTCGGTTAGCTTTTTACTAGCTAGTTCGTTT 57193 37 100.0 37 ..................................... ATTAAATTAGTAAATATAGTATTTACAACGATTTTAA 57267 37 100.0 38 ..................................... CAGCTGGACATTAATTGAACCGTAGTTTGTAAAACTAT 57342 37 100.0 47 ..................................... CATTTCTGTCAGCAATTAATTTTGTTAATAAAATAGTTTTCATTGTT 57426 37 100.0 41 ..................................... AATTACTATATATCTATATTTATACAACCTTATTTTTTAAT 57504 37 100.0 33 ..................................... ACATATTATTATACCAGCTACTGGCATAATCCA 57574 37 100.0 38 ..................................... ATCGTATTACGCTGACCAGATATATGGGCATCGAACAA 57649 37 100.0 42 ..................................... TATAAAGACAACATCATTTGGGTTGTCTTCGGTTAGGGCTTG 57728 37 100.0 41 ..................................... TGTCATATCATTATTTACTTTAACTTTGAAGAATCTCAAGA 57806 37 100.0 36 ..................................... AACTAATCTTCCAACAACTAAAACCTTACTTCCTTT 57879 37 94.6 0 ................................T.G.. | T [57913] ========== ====== ====== ====== ===================================== =============================================== ================== 17 37 99.7 38 ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Left flank : ATTTTTTATGCCAAAAATGCATAGAAAAATCCTTTATACTACACCCTAGTAAAGACAAAAATGTTTTTACTCCAGATAATGATTTGTTTTTTTAATTTGCGAACTTTTTAAGTATTAAAAGCTTGAATTTAAAAACTATATTTTTAAAATGACTTCGCAATTTTGTGTTTTTATGTATTTTAAAAATACTTTTGCTAACTTTTATAATTTTTTAAGTTTTTACTGCTGAAAATTTAGGCATTTGCAAACTTAAAATTTCCAAAAAATTCACAAAATATGGTTTTGTAAAATTTCCTAAAAACATTTGCGAACTTTTTTACATTTAGAAGTATTGAAATATAGTCATTTTAAGCAAAAATTAATCAAAAACACCCTTTTTAAAAATCGTAATTAACCTACATTTGCCAACTTTTTATTTACATAACTCAAATGACTATCACATCGGTATTTATAAAAAGATGTTATAATCTCATATCTTTTTAAACATGCAAAATTAAGCT # Right flank : CACAAGCTGTCATTTATTTGTGGTAAATTTTTGTAAAAAAACAAGGAGGTTGCATAAAAGTTAATGTAAATTAAAATAAAATATATAAAATTTAAAAATTTATAACAAAAGGAAAATACATGTTTTTAAATTTACTAACACCAGAAGAAAAAATTTCATTTTTAGAGATAGCACATCATTTAGCTCATAGCAATGGTAGTGTTTCAAATGCTGAGTCTGTAGTTATTAGCGGGTATTGTGCTGAAATGCAAATAGCAAATATAAGCTATGATGATTCTAAATTTGATTTAAGATCGACTTTAAAAAACATCAAATCCCCTCAAAGTCAAAAAATCATTTTGCTAGAAACTATGGCGCTTGCTATGGCTGATGAACTTACGCATTTTGAAGAGCTAGATAAAGAGGAAAAAAGTGTTATCGAAGCTATGCTAGAAGAGTTTGGTTTGTCTAAAAACTTAGCTATTGTGTATGCAGAATGGACTAAGGCTGTATTGTCTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //