Array 1 136443-132689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSSV010000001.1 Marinomonas sp. A79 NODE_1_length_488868_cov_185.063191, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136442 29 100.0 33 ............................. TTTGTTTCATTTTGGCCTCTCTTGAGTTTTATG 136380 29 100.0 32 ............................. CCGAGTTCGAACGAAATGCCGCTTGAATAGCC 136319 29 100.0 32 ............................. GAACGGATTTGAGCAACTCGTAACACTCAGAA 136258 29 100.0 32 ............................. CTAATTGGTCGCATTTGTCGCGTTGTTGAAAA 136197 29 100.0 33 ............................. TGGCCGACAGCACGCTGGCCGCACTAAACCAAG 136135 29 100.0 32 ............................. CTGAGTTAGTTCTTGGTATTAGCAACTGGTTG 136074 29 100.0 32 ............................. TGAAAAATCTTATCATCATAGTAATTCTGCTG 136013 29 100.0 32 ............................. GAAACTACTGAAAAGCACAAGCGGGGAGAATA 135952 29 100.0 32 ............................. GTAAAGGCTACAAACTCGTAACATCAAGAGGC 135891 29 100.0 32 ............................. GCTACTTCTGGAATATTGAAGCGTATAAGGGT 135830 29 100.0 32 ............................. GCCAAACAAGACGAAAAAGGCCGATATGTTTC 135769 29 100.0 32 ............................. TCTGACCTTGATTACCGTGCCAACATGGTTGT 135708 29 100.0 32 ............................. TCAAATTTCGACTGTTAATGCCAGCGGCTACA 135647 29 100.0 32 ............................. GATGAAAAGAATTCATGTTGAAAAGCCAAAAA 135586 29 100.0 32 ............................. GCATGGAGTATCCCGAACAGCAATTGGTCAGC 135525 29 100.0 32 ............................. ACGAATTAAATTGTCACCGCGCCAGCTTTTAA 135464 29 100.0 32 ............................. CATGGATTAGCGGCTTGAGCTTAGCTCCAGTA 135403 29 100.0 32 ............................. TGGCGTAAATTGTGTGGCGCAAGACATTCGTC 135342 29 100.0 32 ............................. TTTGTTTGCATGATTTATCTCTGTACTGCAAC 135281 29 100.0 32 ............................. AGATGTTAGTCATATTAGGGTATTCAGCTTCA 135220 29 100.0 32 ............................. GCCGTAAAGGGGCTTTTTTCGGTGGCGGCTGA 135159 29 100.0 32 ............................. TCGTAGTTACCAACATCGCTTCCTAACACCAG 135098 29 100.0 32 ............................. CGGCCATGGCGTTGGGTAAACTGGTATCAGAA 135037 29 100.0 32 ............................. CGATGTTGGTAACTACGACTTTAATTATTACG 134976 29 100.0 32 ............................. CTGTGGGAATTGGAGGGGTATCTTCTATCAGT 134915 29 100.0 32 ............................. GCACAGCAAGCGACCTAAGAGCCATTCCGTTT 134854 29 100.0 32 ............................. TCCAGCGATTACAAACGCGCTCGCGGAATGAT 134793 29 100.0 32 ............................. CTCTAGCTCTGTCGTAGGACGTGAATAGTCGT 134732 29 100.0 32 ............................. CGTTTAGGGATTACCCAGATGACGGACGCAGA 134671 29 100.0 33 ............................. TATTCGATACAGATTTGCAGAAGAACGTGGCGC 134609 29 100.0 32 ............................. TGAAGCAATTTCTCGCGCGCTTAGCTTTCTGA 134548 29 100.0 32 ............................. TTTGTCCGGGTTGGCGGCAGAGATTAACAAGG 134487 29 100.0 32 ............................. TACAGACTCGTAAAAACATCAAAAGTCAAAGC 134426 29 100.0 32 ............................. ATTGTGGCTGTGCCTGCGGTTGCTGTGGTGTC 134365 29 100.0 32 ............................. ATAGTCTTTGTTCAAACGAGAACGGAAAATAA 134304 29 100.0 32 ............................. GATGCTTAACCTACTGAAATTTATACTCATTC 134243 29 100.0 32 ............................. ATGCTTTGGCGTCGTTCCAGGCTAAAACGGAC 134182 29 100.0 32 ............................. CACAAGGTTATCAAATCCGGCCACTGGAATAC 134121 29 100.0 32 ............................. GGGTTCGTTTTGACAGTGCTAGTGATTGATGA 134060 29 100.0 32 ............................. CGTATGCGCTAAAAGCAGACATTAGTAAGTAT 133999 29 100.0 32 ............................. CCGTAACCGCCGCTTCGCAAACGTACTTAGAA 133938 29 100.0 32 ............................. CGCTTTTAGCTCGCGCAGATACGCATTCACGC 133877 29 100.0 32 ............................. ACGGCCGCATCATCACAACCCTGGATAACGAT 133816 29 96.6 32 ............................C ACGGAAAGAAGTGGAAGCCATTGCCAATAGTC 133755 29 100.0 33 ............................. CGGCACAGGCATCGGCTTAGGCGGCGTCATTTA 133693 29 100.0 32 ............................. CTTTGCGTGAAATGGTTTCTACTGGTGTTGCT 133632 29 100.0 32 ............................. TTACGGTGATTCACCATGCACGGCGGCCATTG 133571 29 96.6 32 ............................T CATATCCTCGGCTTGTACAATAGCCTTTGTGC 133510 29 100.0 32 ............................. CATCAGCCGAGTCTAGCCCAGACTTAACCATG 133449 29 100.0 32 ............................. CCGCGTAATTTAATGACGAACCAACAAAAACA 133388 29 100.0 32 ............................. AATTGGGCAGGCTGGTAGTCTGCTCTGGTCAT 133327 29 100.0 32 ............................. GAATATATCGCAGCGACCTAGGTTGTTGGATA 133266 29 100.0 32 ............................. TACGCAATCCAAAAAAACGGCGAGTTGGTCGG 133205 29 100.0 32 ............................. TTGATGGTTGCGTCAAAAATGATCAAAGATGC 133144 29 96.6 32 .T........................... GTGGCCAATAGCATTAATAGAATCACTATTAC 133083 29 100.0 32 ............................. CACCGAAACGGCGAGATTGGAACTGTTCGGAC 133022 29 100.0 32 ............................. GGCCATATCACGGGCTAGACTTTGGGTTCTCG 132961 29 100.0 32 ............................. GTCAGGCGGCTATTAGTTCTGCTATGGCTATG 132900 29 100.0 32 ............................. GCAATGGCACCTGTGCCGAATAGGTAAGACGT 132839 29 100.0 32 ............................. GTGGGTAACGGGCGATTGCTTACATCTGAAGA 132778 29 100.0 32 ............................. GTTTACACGGCGCAGACAAGCACGGGCGAAAC 132717 29 86.2 0 .........A...GT............A. | ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.6 32 GCGTTCCCCGAGCACACGGGGATAAACCG # Left flank : TACCTCTTATAGAAGAAGTACTTGCAGCAGGGGAAATAGAACCGCCTAGTCCACCAGAAGACTCACAGCCACCCGCTATTCCAGAGCCAAAATCTTTTGGCGATAGTGGCCATAGGAGTAAATAATTATGGCCATGTTAGTCGTGGTAACCGAAGGTGTTCCTCCTCGCTTAAGAGGGCGTTTAGCTGTTTGGCTTCTAGAAATTCGAGCAGGTGTGTATGTGGGTGATGTAACCAGACGAGTCCGCGAAATGATCTGGGAACAGGTAGAAGTTTTAGCAGACAACGGCAATATAGTAATGGCATGGGCAACGAACACAGAATCTGGTTTTGACTTTATCTCTTATGGTGAAAATCGAAGAATGCCCATCGATTTAGATGGATTGAGGCTGGTTACATTCACGCCGAATAATGAATGAATACTGTAATATCGCTCCTTAAAAAGTTGGTAGAAATTCAAACAGGATATTTCTCTTTATAGAACAATAGTATACATTTAGA # Right flank : TTGGCCGAAATTGTCACACAAGTTTCAGCTTAGCCCCGAAAGCGTATCTTGCGAGTCAAGTATGGCCATTATTTCAATGGTATCGTCCTTGATTCGGTAGTAGATGTTGTCTGCGCCGCAAGGGCAGCGGCGGTAGCCAGGTCTTGTGTGGTCAATGGATTGGTATAAGTAGGGATGATGGGCGATTTTTTTAAAGGTGGCAAAAAAGGTGTGAAAGTATTCGTCAGCCAATGCCTCGCCAAATTGTTCAACGCCGTATACATAAATGCGGCGCAAATCTTCTTTGGCTGCGTTTGATATCCGATATTCAGTCATGCTTTGTTAGGCCCTGTTTAAACTCTTGCAGTATCTCTTCGGCATTTTGCTCACTAAAGCCAGATTGTTCCGCGGTGGCGAGTTTGCTGTTAATAGCCTCAGCACGTCTGGCATGGCGGATAAGTTCGTTAATTAACTCGCTTTTGTTGCTGTATTCGGCACCGGAGGTGACTTGTTGCTGTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGAGCACACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //