Array 1 65375-63477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSW01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain inss12 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65374 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 65313 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 65252 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 65191 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 65129 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 65068 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 65007 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 64946 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 64885 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 64824 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 64763 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 64702 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 64641 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 64580 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 64519 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 64458 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 64397 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 64336 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 64275 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 64214 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 64156 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 64095 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 64034 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 63973 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 63912 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 63851 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 63790 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 63729 29 100.0 11 ............................. CGGCCAGCCAT Deletion [63690] 63689 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 63628 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 63567 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63506 29 93.1 0 A...........T................ | A [63479] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83273-81657 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDSW01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain inss12 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83272 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 83210 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 83149 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 83088 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 83027 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 82966 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 82905 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 82844 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 82783 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 82722 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 82661 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 82600 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 82539 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 82478 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 82417 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 82356 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 82295 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 82234 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 82172 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 82111 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 82050 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 81989 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 81928 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 81867 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 81806 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 81745 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 81684 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //