Array 1 299651-297762 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAGY01000002.1 Lacticaseibacillus rhamnosus strain DS9_11 DS9_11_2_length_340876_cov_20.607902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 299650 36 100.0 31 .................................... TTTAGAATACGATTATAAGACAGTAGTTTGG 299583 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 299517 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 299451 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 299385 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 299319 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 299253 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 299187 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 299121 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 299055 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 298989 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 298923 36 100.0 30 .................................... CTCGTGACTTGTCGTGATATGCATACGCGC 298857 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 298791 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 298723 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 298657 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 298591 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 298525 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 298459 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 298393 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 298327 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 298261 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 298195 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 298129 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 298063 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 297997 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 297931 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 297865 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 297799 36 86.1 0 .......................AA.C....G...G | T,C [297765,297771] ========== ====== ====== ====== ==================================== ================================ ================== 29 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //