Array 1 51189-51612 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51189 30 100.0 35 .............................. ATGTTTTCTCTCCAATATGTTAAGCCTGCATAACT 51254 30 100.0 36 .............................. AACAATACCGCCTTTCTAATCCTAATTTTTGTTTTA 51320 30 100.0 36 .............................. ATCTATTAATTGTAGTTACAATTTTCTTTAATACCC 51386 30 100.0 35 .............................. GAAAAAGAAATAAATAGAATTAGAAAAGAGTGTAC 51451 30 100.0 35 .............................. TTGATTTGGTGAGTTTCTTCATTTGTAAGTGCTTT 51516 30 100.0 37 .............................. TTGTCTTTAGGTTTTCCATTCCCATATTGTTTTGCAA 51583 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAAGTTCAGAGGAAACAGTAATTAATGGTGAGAAAGTATATGTAGATGGTGATAATATTTTTAAATTACCAATTAGTGAAGAGGATTTTTGTAAATCTCTATACTTTAATAGTATAGTAGTAAGAATAGACGAAGATATGGAGATAATGGATTCAAGAATAATGATAGAAGCTTTTATAGATACAAATCCAGATTATTTTGCAGGTCATTCAATGGAAGTTACAATAACAGATAATTATAAAATATCAGTTGATGGATTGGCGGGTTAATATATAATATGTTATGTGTATGGGATATAAATATATTAAATTAAAAATTATAAACTTTCCCAGGTGATTTTAAATAGGAATATAGTTTAAGGTATTGATTTATAAGGGTTTATATGTTATTTTTGAGTTGGTTTTTCAAAAGTTAAATCGCTTGGGAAAGTTTTAGAGAAATGTTGAAGTATCAATGGTTTTATGGAATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TCAACTAATGATAAAGTAGTAGTGTTTAACACTGACGATAGTGAAATTTCAGAAATTATAACGGCAGCTATCCATGACTCTAGTGGCATAGGTTTAGAAGATACGAGTTCTTTAAAATTTATGATTTTAGAAGGGGATTGGAATAATAAAGAAATTCCACAATGCTTTGAAGGAATTAAGTCCGCAGGTGAAAGTGGTAAAATACAAGTTTTAAGTAGAGGTAAAAATTTATTTAATAAAGATAGTATTTATTATTTAAACGTAGTTACAGGTAAGACTATAAGGAATCTAAGTAAATTTGGTAGTTCTTTTATTGTAGTTAAACCCAACACAAGTTATATGTAGTAGGATCAACGCATTAGAAGGAAATGTTGTAGATATTGAAAAAGAATTAAATGCTAAAGCTAATCAAGAAGATTTTCATAAATTGGTTAAATTAGATAAACATGCAGATAGTATAATTAAGTTTATTTCTGAGCTTAATTGTACAGAATCCTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 56201-55135 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56200 30 96.7 35 T............................. ATTAACCTTAGTAGATAAAAATATAGAAAACAGAA 56135 30 100.0 34 .............................. TATTAGAAATACTTAGATTTTTAGGTACAGGGAC 56071 30 100.0 34 .............................. ATATCCATAGTTATTTCCTTTACTACCAAAACTT 56007 30 100.0 35 .............................. ACCTTAAGGTCCAGGAAAAATAGAGAAAATTGGGA 55942 30 100.0 34 .............................. TATATGTATACGCATGAGCATAGAGGATGGTTTA 55878 30 100.0 34 .............................. ATCAGACTAATCAATTAGGAGATACAATTTATGC 55814 30 100.0 32 .............................. TCCATGTTCGCAACCATAGTTATTCCAACCAT 55752 30 100.0 37 .............................. TTTGGTATATTTCTCCTTCTTTTGCTTTTATTTCTTT 55685 30 100.0 34 .............................. ATATTCTTCATATTGTTTTATTTTTTGTTCCTTA 55621 30 100.0 35 .............................. CTTTGTTTACTATCCCAATTTAACCTCACCTCTTT 55556 30 100.0 34 .............................. GTATATCCTGCTTAGACCTTCCCTTATAATTTGT 55492 30 100.0 35 .............................. TAGACTTCTGCTTCAAGAAACACTTAATATTACAA 55427 30 100.0 36 .............................. ACTTGGGTTAAATATATTTCGATTTCTTTATTGGAA 55361 30 100.0 36 .............................. ACTTGGGTTAAATATATTTCGATTTCTTTATTGGAA TAA [55350] 55292 30 100.0 36 .............................. ACTTGGGTTAAATATATTTCGATTTCTTTATTGGAA 55226 30 100.0 32 .............................. GAGAGAGTTCAAGCTATCAATGGTAAAATAGA 55164 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.8 35 ATTTAAATACAACTCTTGTTATTGTTCAAC # Left flank : AACTCAACTAAATCTGTTATAAAACTATTAAAATCATTCATATTAGTAATTTGATTTTCACGATTTTTTATAAATTTATACATTTCTTTATTGGTTGAAAATCTAAAATAGTTCACTATTTGCATCATTATACTACTTAAAAATTTTTCAACTTTACTATATCCTTCTGTATCTATAGCTTCAAAACTTATTTTTATAGGCAAGTATTCTTTCATATGATTTAGTCTTTTCTCTAACAAATATAAAGTAGTGGTTTTCCCATACTGTCTTGGTCTATTTATAATAAAATATTCTTCATTATTTACCAATTTTAATATACTATCTAGTTTATTAGATATATCTACCATATAGTGTCTTTCTGGTATACAGGTTCCAGTTACATTAAATCTTTTTTTCATATAACTTTCACTCTCCTTACCCTATTATATTACCATAGAACAAGATATTAAGACAGAATAATCATGGGTTTAAAAGACATGGCTAAGTTTTTTTAATATATA # Right flank : CACTGTAAAATCAAGGTTTCTTAAAATTAAGAATATCATAAAACCATTGATATTTCAACATTTCCATAAAAATTTACCAGGCGATTTAACTTTTGAAAAACTACATTTCAAAATAGGATATAAACCCTTATAAATCAATATATTAGAGCATATTCCTATTTAAAACCACCTGGTAAAACTTTTATTTATAATATCAAGTCTTCCCCTGTACAACTGTATGGATTTCCTAATATTTCTTCATCATAAACTTTATTATTCATAACGAATTCCTCTGGAAGTATATTTTTAAATTCGCCATAAAGTCTTTGCCAAGTTTCCCCTTCCACTTGCATTATTTGTTTTATATCATTGGCTTTTTTCAAGTTTATTTTGCTATGATTTTTTATCATGTTTATAATAATGATATAACAGCTCGTATATATTACCTCCAATAGCCTCCACTATACTTTTTGCAACTTCTAGTCTTCTACTTTGATAAGTTTCAACTTGTTTAACAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACAACTCTTGTTATTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 58175-58598 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58175 30 100.0 37 .............................. AGAAAAACACATATCATTTTAAAACATCCGCAAGGCA 58242 30 100.0 34 .............................. TAGAATTGTTGTAGTAATAATATTGAACTAATTT 58306 30 100.0 34 .............................. TTTACTATATTTTCACTTAGCATTTCAATATCAC 58370 30 100.0 36 .............................. ATGATGGCGAGAAATGTAAGATTGGAAGGGCAGTAA 58436 30 100.0 36 .............................. GCAATATCATTTAATTCAGATTTCCTAAATCTCTTA 58502 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 58569 29 86.7 0 ...A............T.-..........A | T [58583] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGAGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATATTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAAGGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTTAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 67902-68520 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 67902 30 100.0 34 .............................. GCTTCATCTTTTAATTTGTTATGCAATTTTTTAG 67966 30 100.0 36 .............................. TGATGTTGGGGCTGTGTCTACTGCTAGAAATAATAG 68032 30 100.0 35 .............................. CCACGTACTGGATTTCAGTACATGGTTCCACGTAC 68097 30 100.0 34 .............................. ACTAATTTCTTAAACAAAAATAGAAGGGTTTTAA 68161 30 100.0 36 .............................. GTATACCCCGCTACTACACCGTTTAAATAACTGGTA 68227 30 100.0 36 .............................. TGCAATTCATCCGAATTGTTTCTAGTATCTATATCT 68293 30 100.0 36 .............................. GTGAATTTAATAAATTAACCAAGTAGTGGCATCCTT 68359 30 100.0 35 .............................. AATAATCTAATAGGTGGAGAACAATACGCAAGTGG 68424 30 100.0 37 .............................. CTTTCTTACCTTCCTTATTTTACTCTTTTTTCTACCC 68491 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGGTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 70642-71324 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 70642 30 100.0 35 .............................. AGTTATTATAACTGCTGCAAAAATAACAGGTGATT 70707 30 100.0 34 .............................. GGCTAAAATTTCTCTTAAAACCGCAGATGTAAAT 70771 30 100.0 35 .............................. TAGAACTTCAACTACGGATCAGCATTTAGATAGAG 70836 30 100.0 37 .............................. AAGTGTAAAGATGACCCTTCTTTTAAAAAGTCACTAC 70903 30 100.0 36 .............................. TATTACCACACCTTTAATTCGTCCATTTTTTTATTA 70969 30 100.0 34 .............................. GCCCTAGCTCCTGCCTTCCCCATACCCTCAACTT 71033 30 100.0 37 .............................. TAGCTCTCTTCAAACTTACCCAAATCTTCTAAAAGAA 71100 30 100.0 36 .............................. TATATTTTTATTCCTAATTCCTCTAGTGCAGATTTA 71166 30 100.0 34 .............................. TATGGAAACATTGATGTATTTCTATGTTCTCATA 71230 30 100.0 35 .............................. AGTTATAATCATATAGTTTTTTCGCTGGCACATAA 71295 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGAAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 75461-75814 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 75461 31 96.8 35 G.............................. CTAAGATACATCTTTAAACCATACATAGCATTTTT 75527 31 100.0 34 ............................... AAAGAGATAAAAACATTTTTAGGTTTTTAGAATC 75592 31 100.0 33 ............................... TCGACTAAAGGTTATATTTGGGGGTAAGATAAA 75656 31 100.0 33 ............................... AGAAAAAACAATTATAGAAATTGCTAAACAATC 75720 31 100.0 33 ............................... ATCTTATCTATGTAAATTAGAAAACAAAGGGTT 75784 30 87.1 0 A................-.A...T....... | T [75798] ========== ====== ====== ====== =============================== =================================== ================== 6 31 97.3 34 TGTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : GTATGTAGTGGATATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAAGCAGTAATAATACCTATGGAAGATGGTAGAGTAAAGGTGAACTTTAATGAAAAGCAAAGAGCTATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAGTAGGCGGAGGAATAATTGAATAAATTTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTATATGCTTTAAAGTATTGATTTAACAGGGGTTGATTAATGTTTTAAATTAGTATTTTAAAAAAGCTAAATCATCTGGTAAATTTTAAAGGAAATGTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGT # Right flank : TAAATCATTTTGAGAATATAAATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGGGAATAGTTTCTTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATCGGTGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCTCATATGCCACACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAATATAATAACCTGTTGATATTTCCAGTTTAATTGATTAATAGAACTTTTTACATGTGTAATTAGTTCTTCTTTTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 77884-78307 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 77884 30 100.0 36 .............................. ACTATACCAATGCCTAAAACCCATATCCTTGGAATA 77950 30 100.0 36 .............................. TCCCATATACCATTAATTTGACCTGTAGCAGTGTCA 78016 30 100.0 34 .............................. CAGATTATATTATGTTTATTGCCTAGCTGATCTT 78080 30 100.0 35 .............................. TAGTTAAAATGTGAGTATCTTATGTCCCCAATTAT 78145 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 78211 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 78278 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ACTATTGGACTCTAAAAAAGACGATGAAATAACAATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATTTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : AAACTAAGCGAAACTATTAAAAGACAGGAAGTAGAAAAATGTGATACTTAAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAAGGTATATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTCACAAAAGTACAGGAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGACATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 94102-94460 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAN01000008.1 Clostridium tetani strain 1337 NODE_8_length_116292_cov_49.898058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 94102 30 100.0 34 .............................. AATGTAACTACTGTAGCATTCGCATCAAGTAAAA 94166 30 100.0 36 .............................. CTTGCCTGTGTAACTATTGGTAACAATACAACCCCT 94232 30 100.0 36 .............................. TGGGATTAGACATATTATTAAAGTCTTGTGGTATTT 94298 30 100.0 36 .............................. GATGAATAAGGCTAGAAGGAATTTTAAAATTTAAAA 94364 30 100.0 35 .............................. GTTTTTATTTTTTTTGTACCAATATACACAGTAAC 94429 30 93.3 0 ........................C.C... | AC [94453] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GGCGGACTTGTAACTGTTATGGTTAGAGGAGATGTTGGAGCTGTTAAGGCTGCTACAGATGCTGGAGCTGCTGCTGCACAACGTGTTGGAGAATTAGTGTCAGTTCACGTTATACCACGTCCACATTCTGAAGTTGAAGTAATTCTTCCATCAGCTAAAGAAACTGCAAAATAATATTTTAATTATAGTGTAAAGTAAAAAACGTCGCTAAAATTTTTTAGTGACGTTTTTATTTTTGAAAATATAATGGTTAATGAAATAAGTATTTAAATATGCAGAGCCTTTTAAATTATATAGAATTATTGATATAATTAACATATGAATTTTACCAGCCGAAAAGAATTTTAGAATCTAGCTTAATCGTTGATATATAAGAGTTTAAGGTAGGTTTTTATATGATTTATAAAATTTTAAAATCACCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTCTTTCCAAATATCTTATTCTATCAGCGTCTTACCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTATAATGTAAATAATATTATTAAGTATGGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGTAATATTAATAATTTTATCCGTCATAATTGCTATATCACCAAAGCTTGGGTCTATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAACCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAGAAGATAATAAGTGGAAACAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //