Array 1 291929-286523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDR01000006.1 Pseudomonas stutzeri strain YC-YH1 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 291928 29 100.0 33 ............................. CGTTCCTTGATGTGATACGACGAATCGAGCAGC 291866 29 100.0 32 ............................. TCGCTTGCCGCTTCGGCGAGCAGTTCCATTTG 291805 29 100.0 32 ............................. CGTTATACAATCGGCGGGCACTTAAACACATA 291744 29 100.0 32 ............................. GGTCAGTTTGACAGCGAGGTCGCGGTGACCAA 291683 29 100.0 32 ............................. CTGCGGCTTGGCTTTGCCGTGCAGCTGGCTGC 291622 29 100.0 32 ............................. TCGGAACGCGCGGCGCAGCCTTCGGCATGCAC 291561 29 100.0 32 ............................. CCGGTTATGCACTTCGGTCTGACCGCTACCGG 291500 29 100.0 32 ............................. ATGAGCACTGAGAACGTCGCACCCTTCTCGCA 291439 29 100.0 32 ............................. GCCCGCGCCGCCCTGTCCGCCCCCATCGCGCA 291378 29 100.0 32 ............................. GCACTGGCCTATGATCCGGCGGAGACCTATGC 291317 29 100.0 32 ............................. TCGGCAATGAGATCGACGTGCGCGCTAATTAC 291256 29 100.0 32 ............................. CCCGCGCTGGGCGGGCTAGGTAGCTGCTGCCG 291195 29 100.0 32 ............................. CGTCCAGTACCGCAGCCTCGACGAGATGATCC 291134 29 100.0 32 ............................. ACGTTGGGGCGCTTCCTCTTAACGCCGCCGCA 291073 29 100.0 32 ............................. TCGTCGATGTTCTCGACCAGGGCAATGTCTTC 291012 29 100.0 32 ............................. AATAGTTGAACCGCTAGTTGATTCGCAGGGAT 290951 29 100.0 32 ............................. CCTTCGCGGGTTTCGATGTACACGCCCTGCGA 290890 29 100.0 32 ............................. GTTGCCGTCATCCGCCTCCACTAGATGCTCGG 290829 29 100.0 32 ............................. AGCCTGCATCGGAGAGTGATCAGTCTGCGCGA 290768 29 100.0 32 ............................. GTGACCACCGTTTACGCCGGCTCGCACAAGAA 290707 29 100.0 32 ............................. TCGGCTGCGGCTGCGCGCATGCCAATCCGCGT 290646 29 100.0 32 ............................. CCTGGCCAGGTCGAAACCGTCGCAGGGTGCCA 290585 29 100.0 32 ............................. GCCTCCTCGGCCTCGTCGTCGGCGCGGCCGAG 290524 29 100.0 32 ............................. CCGGCGAGCAGTGGATTAGCGTCTTGCGCCTC 290463 29 100.0 32 ............................. TTGGAACGCCTGCACAACCGCGTGCTGGAGTG 290402 29 100.0 32 ............................. GCATCAGCGCCAACACCCTGGTCGCCGAGCTC 290341 29 100.0 33 ............................. TCCGGCGTCGCCGCGGCGCGCCGTGCCGCCCGC 290279 29 100.0 32 ............................. CCTCGCGGTGGTAGGCTCGCGGTGCCAAATAA 290218 29 100.0 32 ............................. CCGTGGTGCTGGCCACCATCCAGGGCATCTAC 290157 29 100.0 33 ............................. CGCCCGGCCGGGTCCAGGTCCGTAATTTCGGCC 290095 29 100.0 33 ............................. ACTACTTTCCCAGCGGGAATTACAAGCTCCCGC 290033 29 100.0 33 ............................. TCCGGCGTCGCCGCGGCGCGCCGTGCCGCCCGC 289971 29 100.0 32 ............................. CCTCGCGGTGGTAGGCTCGCGGTGCCAAATAA 289910 29 100.0 32 ............................. CCGTGGTGCTGGCCACCATCCAGGGCATCTAC 289849 29 100.0 33 ............................. CGCCCGGCCGGGTCCAGGTCCGTAATTTCGGCC 289787 29 100.0 33 ............................. ACTACTTTCCCAGCGGGAATTACAAGCTCCCGC 289725 29 100.0 32 ............................. GGCCGCGGCACGCTGTTCAACCGCCTGATCCG 289664 29 100.0 32 ............................. TCGGTGAACTTGGCGGGCAGTTCCACACCCAG 289603 29 100.0 32 ............................. TCTCGATGACATTCTGAACTCCCAGGACGAAG 289542 29 100.0 32 ............................. GCCTTGCGCTCGGCGAGGATGGCTTCGTAGTC 289481 29 100.0 32 ............................. GTCGCGCCGATCTGGCGTGACTTCAGGATCAT 289420 29 100.0 32 ............................. TAATTTGTGAAAAAGCAGAAATGAGGGCTTCT 289359 29 100.0 32 ............................. GACGTGAGTGATGATCTCGCCGACGATGTCCC 289298 29 100.0 32 ............................. CCGCCGCTGCTGCTCAGGATTCCGATTGGCTC 289237 29 100.0 32 ............................. ACCCCGGACAAGGCCGTAGGCGGATAACCGGG 289176 29 100.0 32 ............................. TAGTTGTGGTGGTTGTCGTGGTGGTAGTTGTG 289115 29 100.0 32 ............................. CCGTCGAAGGCGGCGGCACGCTGCTCGTCGAC 289054 29 100.0 32 ............................. TCGCTGCGCACGGTGCGCGGCGTGACGGGAAC 288993 29 100.0 32 ............................. GCCGCCGCGCTGATCCTGGCCGAGCTGCAACG 288932 29 100.0 33 ............................. ACCTGCTGCGTTGGTTCGAGGATCGCGCCGGCC 288870 29 100.0 32 ............................. CGAAGCGGCAGCGGCTGCAACGCGTTGTTAGA 288809 29 100.0 32 ............................. TCGCTCAGCTCGGCTACCACCCAGGTGCTGTC 288748 29 100.0 32 ............................. GAAACAGCGCATGACCGGGCACTTCGCCTGAT 288687 29 100.0 32 ............................. GTTGGGTTCTGCGCGTAGGCGTAGCCATCAGC 288626 29 100.0 32 ............................. CCCTTGCCGATGGCATCGAGCAGGTCGAAAAG 288565 29 96.6 32 ............................A GGCGCTGGAGCAGCGAGCGGGCTTCCGCCGTC 288504 29 100.0 32 ............................. CATTGGATTCTCCCGATAGGGCGGCGCGGGCA 288443 29 100.0 32 ............................. ATAGACGGCCAGACTTGGCTGGAAATTGCACC 288382 29 100.0 32 ............................. GCAGAGCAGATCGAACAGGAGCGCGCAGCATG 288321 29 100.0 32 ............................. TTCGACATGCTCGCTACGCGAGCTGCCCGCCA 288260 29 100.0 32 ............................. CTGACCGGGCGCGTATCAAACATCGAATTCGC 288199 29 100.0 32 ............................. TCCACATGGAGCCGGAAGCGGGGATCATCATC 288138 29 100.0 32 ............................. CCGCCAATGCGGGGCCCAACGCTGGAGGTAAG 288077 29 100.0 32 ............................. GAGATTGAGTAATGAACGACACACTGAAAGCA 288016 29 100.0 32 ............................. CTGGATGCCGCGATTGACCATGCGGGTCAGTT 287955 29 100.0 32 ............................. GTCCAGCAGCGTGAAGCGCCCGGATGGGTGCC 287894 29 100.0 32 ............................. CGGGTATCGGTGCTGTCGCTGCTGGAGCTGGT 287833 29 100.0 32 ............................. ACGCTTGGCACAGGCCAGCTCCCGCATGTTCG 287772 29 100.0 32 ............................. AAGAAGCTTTCGAAGAAGGCCCTGGCAGACCG 287711 29 96.6 32 .....T....................... GCTTCGGTGATTTCCATGTAGTCGGTCATGCC 287650 29 100.0 33 ............................. CAGCACTAAACAATCACTGAATCAAAAGTGCCG 287588 29 100.0 32 ............................. TCGTTGTAGCTGGGCGTGTACTCGTAGTGGTT 287527 29 100.0 32 ............................. GCTGATGTGGCTTTCGGCGGCAAGGCCATGGA 287466 29 100.0 32 ............................. GTGCTGCTACGGCGCAGCCTTCCCTATGTCGG 287405 29 100.0 32 ............................. GGCAACGCGGCAACTGCGCTCGCAACTGCCGG 287344 29 100.0 32 ............................. TAACGGCGCCGTTGGTGAACAGGCGGCTGCCA 287283 29 100.0 32 ............................. GACCCAGACGTACCGGACCGCATGCCCCTTGC 287222 29 100.0 32 ............................. GCGTATCTCAAGGGGCCTGAGTTTCGCCGCCA 287161 29 100.0 32 ............................. ACCGAGTGGGTGCAGAAAACCGCCGAGGTGCA 287100 29 100.0 32 ............................. ATGGGGTCCAGTAATTACACGGCCGGCTGGTG 287039 29 100.0 32 ............................. ACCATCACAGATTACCGCGACACCAAGCAGGC 286978 29 100.0 32 ............................. CGATCAACGAACTGGATGAGCTGATTCCCTCC 286917 29 100.0 32 ............................. AACTCGCCTTCGCGCCCCTCGGCGGTGGACTC 286856 29 100.0 32 ............................. GTGCGCCGCGTGGCATCCATCACCATGAAGGA 286795 29 100.0 32 ............................. GCGCTGAAGAGGCTCATGCCCTCGTTGCATAC 286734 29 100.0 32 ............................. CCTCGACAGCTGGCTCGCCGCCTGGCATGACG 286673 29 100.0 32 ............................. ATGCAGCACTGGCAGCGATCGGCTGGCAGCAT 286612 29 96.6 32 ...............A............. ATGCAGCACTGGCAGCGATCGGCTGGCAGCAT 286551 29 93.1 0 ...............A............T | ========== ====== ====== ====== ============================= ================================= ================== 89 29 99.8 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGGCGCATCATCCCGCTGATCGAGGAAGTACTCGCCGCTGGGGGCATCAACCCGCCCGAAGCGCCGCCAGAATCCGTTCCGCCGGCCATTCCCAATCCGGACAGCCACGGCGACGTCGGCCACAGGGCGAAGTAATGACCTTTCTCGTCGTCGTTACCGAAAACGTACCGCCGCGCCTGCGCGGGCGGCTGGCGATCTGGCTGTTGGAAGTTCGGGCAGGTGTCTACATCGGCGATGTCTCGAAGCGCACCCGCGAGTTGATCTGGCAGCACCTCGAAGCCGGATTCGAGGATGGCAATGTCGTCATGGCCTGGGCCAGCAAGAGCGAATCCGGCTACGACTTTCAAACGCTCGGCCCCAACCGCCGCGAACCCATCGACTACGACGGCCTTAGATTGGTCGCTTTCCAGCCGCCGCAACCCCCTGATCTTTAACAAAAGAACTCGGTAGATTTTTCGTGGCCGATTTTCTTCTTGTAGGACAATCGGTTACGTTTGGT # Right flank : GAGAGGCTGGCGACCCCGTGTCTACCTCGAGCCGCGGGCGTGTCCATGGCGGAGCGAGGCTCGGTGTAGCGTTTCCATTGGCCGCCCGGAGGCATCGGCCGCGCGGTGGTGCTGGCGCGGCTACACTCGATGCGCTGGGCGGAAAACGCTGCCTCGCGGGCGTTCTTGTCCGCGGTAATTTTTCTGCCTGGCGTCTTGTGCTTAGCTGCCGGTGACGGCGTGCTCGCCGTGGCTCAGCGGGACGGTCGACCTTGGTATAGCTGTCGAAATGGCCCGGGTCCCTAGAATGGGGTTGTGATCGGCGCGTTCCGCCAGGGGGCGGAGCGAACCTTTAAAGGCGAGCCGGGCAGGTCTGCCGCGGCACTCGGCCATACGCCGTCAGGTTATGCAAAGGGTATCGAGAACCGACCACGGACGAATTCAGAACAATTTCAGAGGTGTTGCATGGCAACGGATTTGAGCAAGTACATTCGCAATGCTGCGTTCATCGACAAGGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302965-301959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDR01000006.1 Pseudomonas stutzeri strain YC-YH1 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 302964 29 100.0 32 ............................. TGAGCACATCTCGCTCCAGCTCATCGAGCATG 302903 29 100.0 32 ............................. GTGGTTTCGCCATCGCGATGCTTGGCGATGTA 302842 29 100.0 32 ............................. GACGGGCACAGCTCTTGCCGGCGGACCTTTCC 302781 29 100.0 32 ............................. TCCATCCGGATATAGCGTGGCGGCTCAATGCG 302720 29 100.0 32 ............................. CGGACTCCCCCCAGTTATCCGCCTGAGGCCTT 302659 29 100.0 32 ............................. GTCGGCGATTGGCTCGCTGATGGCGCGGTCAT 302598 29 100.0 32 ............................. CCAGCGCCCTGACCGCAAACAAGCGTTCGGCC 302537 29 100.0 32 ............................. GCCCTGGATAGCCCGGCCACAGTTCCAGCTGC 302476 29 100.0 32 ............................. CCCATATCGGTTTCATTGGACTGGTCGATGTG 302415 29 100.0 32 ............................. TAGGCGATCGCCTGTTCGGGTGGCAGCGCCTG 302354 29 100.0 32 ............................. TTTTTCGTCGGGGCGGCTCCCTTTTTATAGGT 302293 29 100.0 32 ............................. AAGATGCCCGCGAGGGCAACAATGATGTTCGA 302232 29 100.0 32 ............................. GTATATATTCGGTCTTGCCGTCGCCTGGGACA 302171 29 100.0 33 ............................. TTCTGAATGGCTACGGTGACGTCATCTTCGAAC 302109 29 100.0 32 ............................. CACGGCGTGACATGGGTCATCCCGATCCGAGG 302048 29 100.0 32 ............................. CGCGCAACGGAGGTGTTCGGCCCGGTCGGTAT 301987 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CCTGGGTGGTGCCGGCTACGTCGAGGAAACCATCCTGCCGCGCCTCTACCGCGAGGCGCCGGTCAACTCCATCTGGGAGGGCTCGGGTAACGTGCAATGCCTGGACGTGCTGCGCGCACTGTCGAAGGAGGCCGGTGTGCTCGACGTCTTCTTCGCCGAGCTCGGTGACGGCCAGGGCGACCGCGATCTGGCGGCGCATATCGCCCGCCTCAAGCGCGACCTGCACGACACCGACGACATCCAATACCGCGCCCGCCAGCTCACCGAAGACATGGCCATCGCGCTTCAGGCCAAGCTACTGCTCGAAGCCGGCAACAGCGCCGTGAGCGACGCCTTCATCGCCAGCCGCCTGGCCACCAGCCGCCGTGCCTACGGCACCCTGCCGCGCGGCATCGCAGTGCCGCCAATCCTCGACCGCTCCAGCCCGGACTGACCGACCGGCAGGCGCGGTAGATTGCGGCGATAGGGATTTTCCATTGCCCATCAGACGCTTACGATTG # Right flank : CTGACGGGCCTATAGTCACGAGTTTCCTTGGCATACATGAAAACTTTACCTGTTCGCACGTCCAGTATTCCGCCATGGCGCGGCAAGCCGTTAGGCTGCGATATCAAATGGCTACCTTAGGTCTTGCCAGCAAACGGGTGAGACACGCTTTCAGGGAGATAGAAAGTGACGGTCCCATCTTTCTTTGCTTATTGGGGAAAGGCATCCGCGCAGGGTGAGAGTGGCGAGCGCTTTCACCTTTTGCCTTTTCATTCCCTTGATGTGGCGGCCTGCGGCCAGACTCTGATTAAGCTGCCGCATTTTTCCCTGCAGCCTTTGGCTCGTGAGCTGGGCTGGCCGCTGAGCCAGGTCGAATCGCTGTTCGTGCTGTTCCTGGCACTGCATGACCTGGGTAAGTTTGCCCGATCCTTCCAGGGGCTAGTTACCGGCCTTTCCCCCGATTTAGTTCCGGCAGACCGTGACAAGCCCTATACGAAGCGACACGACACCCTGGGCTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //