Array 1 31561-32189 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBF01000022.1 Nonomuraea pusilla strain DSM 43357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 31561 37 73.0 46 .C.T.AAC.G......A.....G......GG...... ACTGGATTACCAGCGTTGACCGGTCGGGCAAACGAGTCGTCCCCGT 31644 37 97.3 37 .........G........................... GACCCCGGCCGGGCGGGCTACTGGCTCGTGGCCGGAG 31718 37 97.3 35 .................T................... CGTGACGTGCATCGGCCGGTGGTGGTCTGGCAGGG 31790 37 100.0 35 ..................................... GCGCTGGCCGCGCGGACCATGGTGGCCGGCCCCTG 31862 37 94.6 34 ................A...T................ CGGCCGGGAGAGCGCGGACCGCGTTCGAGCGCTG 31933 37 94.6 38 .........G....T...................... AGCTCGGCGTCAGCCGCCTCTGGCCCATCTGAGACGAG 32008 37 91.9 32 .........G.....A.A................... CCGAAACAGCGTACGCGGCGGCGGACCTTCCG 32077 37 86.5 38 .......A.G.........A..G.............T ATGGGCGTGACCAGAGACTTCCCGTCGACTACGTACGG A [32078] 32153 37 75.7 0 ........TG....T...A.G........G.T...CT | ========== ====== ====== ====== ===================================== ============================================== ================== 9 37 90.1 37 GTGGCGGTCACCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CGCTTCAAAGTCGGACAGGGTCGGCCACTCGCATGGCCGACCCTGTGTTACTGCTTCTCGCAGACCAACCATGATCATTATTGCGATCCACTACCTCGCGACTATGTCGGAGGCAGCCACGGCGCTGAGGCGCCGACGCTCGACTGTAGGTTCAATGAGCGTCGATGGGCAACGGGCAGGAGTCCTTCAATGATCGTGGTTGTACTCCGAAACACGCCACTGGACACCGAGAAGGCGTCCCGCTACTCTCGGGACCGCTCATCGGGGATCTAGCAAGACCCAGGGCGAGGGCGCCCTGGAGTAACTACGTATTGGACTCACCTCTAAACAGAAGGAGAATCCATGGACCGATGGCCGAACTTACTCATCAGAGAAACGGCAAGGACGGTCCGGGGTGCCCTGGGAAGCTGGCCCCGGACCGTCCGCTTCTGCCTGATGATGGCAGTGATGGCACTCGTCTTGGTGAGCGCAGCGTTCACCCTCTCCCACCTCACGCCTTA # Right flank : TGGGATTCGGGCTCTGGCGTGGTCCACAGCTGGTCCACGGGCGGTGAGTGTCAATGAGAAAGGGCGGGACTCCGTGAGAGTGGAGGCCCGCCCGTTCGTATGTTGTTCGCCCTGGTCAGCGGACTGAAACGCTGGTCAGGATCTTGTGCCCCCTGCAGGATTCGAACCTGCGCGCCCGGCTCCGGAGGCCGGTGCTCTATCCCCTGAGCTAAGGGGGCGACGAGTGATAAGGCTATCAGCATCCGGGCACCACTCCGCACACATAAAGGTCCGGGAACACATCCGGGGAAAGTCCGGCGGCGGGTGCCTTCCACGCGTTACCTTGACGGCCGTGGGCGACGTTCTTGGCAAAGTTCTGGTCGTGGACGACGACGAGGTGATCCGCCAGCTCATCGCGGTCAACCTGAACCTTGAGGGGTTCGAGGTGGAGACCGCGACCGACGGGCAGGACTGCCTCGATCGCGTGCTCGACGTCATGCCCGACGTCATCACGCTGGACG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.70,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 546519-544841 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBF01000005.1 Nonomuraea pusilla strain DSM 43357, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 546518 30 96.7 31 .............................C GAACCCACAGGAGAACACCATGAGCAAGATC 546457 30 96.7 31 .............................C GCTGCAGCTTGCCGAACTTCTCCCTGGTCTG 546396 30 100.0 31 .............................. CCATCCGTTGGACGGACCAAGACGGAGAGGT 546335 30 96.7 31 .............................G CTCCTCTCCCCTGCCCAGCCCATCCCCTCAG 546274 30 96.7 31 .............................T ACGCCGGCACCGACGACCTCAAGTTCCTGGA 546213 30 100.0 31 .............................. AGGCGGTCTCCACCCAGGCGGCACCCTGACA 546152 30 93.3 31 .....A.......................C TGGCCAACTTCCATGAGACGTTGAAGCTGCT 546091 30 100.0 31 .............................. GGTGCGGCGCCGGGGTCTGCACGCCGAGGGT 546030 30 96.7 31 .............................C GCTGCAGCTTGCCGAACTTCTCCCTGGTCTG 545969 30 100.0 31 .............................. CCATCCGTTGGACGGACCAAGACGGAGAGGT 545908 30 96.7 31 .............................G CTCCTCTCCCCTGCCCAGCCCATCCCCTCAG 545847 30 96.7 31 .............................T ACGCCGGCACCGACGACCTCAAGTTCCTGGA 545786 30 100.0 31 .............................. AGGCGGTCTCCACCCAGGCGTCTCCTAGTTT 545725 30 93.3 31 .....T.......................C TGGCCGACTCTCGGGGCGCCGGGGTGGGGCT 545664 30 96.7 31 .............................T GATCGGTGCCGCTGAGAGGCCCGCAGAGCGG 545603 30 93.3 31 ..............T..............C CGGAGTACATGCCTCCGCACACGGCGACCGT 545542 30 96.7 31 .............................G CCCAGGACAGGCTGAACGGGTCGAGTGCGGG 545481 30 100.0 31 .............................. GCGCAGTCACACTCCCGATCGGGGTCGAGGC 545420 30 100.0 31 .............................. GGTCGATCTCTTTGATGCGGCGCGTGCCGTC 545359 30 96.7 31 .............................T TCTTCCTTCTTTCTACGGGGAGGAAGGGAGG 545298 30 93.3 32 ............................AC CGCGTCCGACCACGCCAGGGCCGATCCGGACG 545236 30 96.7 31 .............................T CGCGGCCCGCATCCTCACCGGACCGGCGGGC 545175 30 96.7 31 .............................G GGTGCGGCAGCATCTCGGTCAGGCGGACGGT 545114 30 96.7 31 .............................G AGTACGGCGCGGACAGCTCTTGGTGGTACTG 545053 30 96.7 31 .............................T TCAGCACGTATTCAGCACGGTCAGCCGTAGA 544992 30 93.3 31 .....T.......................T GGCCCGCCCTGCCGCCGGCGGGGAGCACGAA 544931 30 90.0 31 ...T................C...A..... ACACGATTTGGGTGGTCAAGGTCCTGGGTGG 544870 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ================================ ================== 28 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : | # Right flank : CGTCATCGCAATGGATCTCCTGGCCAAGGGCACCCGCCGAGAAGACAGCGGGCCAGCGGGAAACTTGGCCGCGTATTTGCCGCGGAGGGCCGTGGGTCCTCGGTGATGACCATGGACGGCCGGACACAACGAGAGAGGCCCTTCACCGCGTTTCCGCTGGTGAAGGGCCTCTTTCTGCTGGTGTGGCAGGTGCAAGGTTCGAACTTGCGTAGGCTGAGCCGACGGTTTTACAGCGGGCTGACGTTCCTGACCGCTTCAGGCCTCTGACCTCGGTGTACGGCTCTCGCATCCCCCGTGCCAGGAAAGATCATCCCGGGTATATCCCGCGAGGTAGAGACAGCCACCAGCGCCCCAGGAACGTGCGGATATCTCGCGCAGTTCATAGCCTCAGGAACTGACGATGGCCGACAAAGACGCATGATCAGCAGGCAACCCTACGAGAGCGAGGGAAATACCTAGTTCCTGCGCCACTCCCGAAGGCACCGACTCCCAGAGGCTAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14242-13846 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBF01000038.1 Nonomuraea pusilla strain DSM 43357, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 14241 30 96.7 31 .............................T CGCTCCACGTCATCTCCTCGATGACGGCGAC 14180 30 100.0 31 .............................. GCAGGTCAGACCGGTTACGGGTTTTCGGGGA 14119 30 96.7 31 .............................A CCGGGCCTCTCCAGTGGTCCGCTCCTCTGCG 14058 30 96.7 31 .............................G ACGCCGAGACTGACCGGGACTACGTCGTGGG 13997 30 96.7 31 .............................G CGCCCCGTGTGGGGGGTGTGTGGGGGCGAGA 13936 30 96.7 31 .............................T CCTCCAGCCCGACAGGCACTCTGCGCAGGTC 13875 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TCTTCGAGCCCGCCAGGCAGCGGTTCAGCGATCACCCGCCGGACCTGCAGAGGCAACCAGCGATCCCACAGGAGCCCTGCCACTGCCCCGCTGTCAGGTAGATGCCGCCACAACGGCAGCCAGCCGTCGGTCGCAGCGTCATGCTTGGCCCAAACAGTACGGGCGGCAGCCGAAAGATCATCCACCTCCCAGCGCAGGAAGGGCTCCTCGTCGAGCATGGCCCTCATTAAAGGCCATGGCGAACGAAGATATTGGGAACACAGGACTCGCTTCTATAACATCAAGTCTTCTGCCAGTGAATAGGCAACCGAAATTACATTCGTCCGAAATAAGAAGATATGGTCGCTTTCGTCAGCTCAGGGCACTCAGAGCGCGGAGGTCAGATGGAGCTAGGATTCCGGAGCCGATGGAGCCAAAGACCAAGGGTGACCGAAATGTCCAAGTCTCAAGAAGTGCTCAAATTCAGCCCTCGGCCCGCGTAACGCCCCAGGTCACGCAGT # Right flank : GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23797-24792 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBF01000038.1 Nonomuraea pusilla strain DSM 43357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 23797 30 96.7 31 .............................T GACTCTTGAAGATCGCAGCCACCTGCACCTC 23858 30 96.7 31 .............................A ACGGCCAGCTCTTCGCCGTCCAGATGGCCCG 23919 30 96.7 31 .............................C GACCCGAACCCCCCTTGCTTGCTGAACCGCA 23980 30 100.0 31 .............................. CCGCCAGGACCCGTCCGGCCCACCCAGCACG 24041 30 90.0 31 ................T..........G.T GGTACGACCCCGAGCCCGAAGACCCGGGCAT 24102 30 93.3 31 ................T............A CGCTGGGGACGAGCGCCCACCAGATGCGGCC 24163 30 93.3 31 ................T............C GCGTGTTCTCCTGCCGGGCCTCGATGAGCCG 24224 30 96.7 31 .............................A CGTCGACGTTCATGCGGAAGTCGGTGGCGGA 24285 30 100.0 31 .............................. CCTGGCGTTCGCCACCGACCTTCTGCTCGAA 24346 30 100.0 31 .............................. GGATGATGCCCAGCTCGTACGTCAGGAACGG 24407 29 86.7 28 ...........A.....-........TT.. CCCCAGTCTCGCCGTACCAGCTCCTGCA 24464 30 86.7 24 ................T...T.C......C TCACGCTCGCGTACCAGCGGTTCG Deletion [24518] 24518 30 83.3 31 .C....G..C.C...A.............. ATGACGACGGGCAGGGTCACTGCCCAGACCT GGT [24524] 24582 30 90.0 31 ...T............T............C GCAAGTCAAACGCCGTATCGGTTTGAGCATC 24643 30 96.7 30 ........T..................... CACCGACCGCTACGAAGCCCGCCACGCGAA T [24668] 24704 28 86.7 31 ............--..........C....C GGTACGCGCGGCACCGCTGGCAGGTCACCAC 24763 30 86.7 0 ......T.T...................GC | ========== ====== ====== ====== ============================== =============================== ================== 17 30 93.0 30 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TCGACGAGGTCCCCTGGTGACCGTCATCGTGCTGACCCGCTGCCCGGCGGGGCTCCGCGGATTCCTGACCCGCTGGCTGATGGAGATCTCGCCGGGCGTCTTCATCGGCGGGCCGTCAGCCCGTATCCGGGAGGCGCTGTGGCTGGAGGTTCAGCAGTACGCCGACACCGGGCGGGCTCTGCTGGCGTACACGACGGACAACGAGCAGGGCTTCACCTTCGAAACCCATGATCACAAGTGGCATCCGATCGACCACGAGGGCCTCATCTTGCTGCGCCGCCCCAAGGCGCAGCCTGCGCCGTCGACCAACACGGCGCCGAGCAACTGGAGCAAGGCGGCGAAACGCCGCCGGTATGGCCAGCGCTGAACCGCCGCTGCCTGAGGCCCTTCTCGTCTCTTCCCGTTCGCCACGACCGGATGCCCGAGCGTCCCAATTGTCCGACTCTCTGAAAGTGCTCAATTTCGGCCCTCCCGCCAGCTATCGCCGCAGGTCGTCGAGT # Right flank : CAGGACGGCCTGGATGGCGTCGCCGAAGTCTCGCTCTCCGCAGATGCGGGACGGCTTCCTTCGCTTGCGGGGCTGTTTCTCCAGGCACGTCAGCGACCTGCCTTGTAAACGGAGTGAGGTGCTCGCTGGGGTGCCACGGCCAATACGCGGCCAAATTCCCTGCGCCTTCCGTGTTCCTGCACGTCAGAGCCTCGTTGCGACGGGACTGTAAAACCGTCGGCTCAGCCTACGCAAGTTCGAACCTTGCACCTGCCACACCAGCAGAGAGAGGCCCTTCACCAGCGGAAACGCGGTGAAGGGCCTCTCTCGTTGTGTCCGGCCGTCCATGGTCATCACCGAGGACCCACGGCCCTCCGCGGCAAATACGCGGCCAAGTTTCCCGCCGGCCCCGCCCTTCTTCTCGGGTACCGGCACCCATTCGGTCTAAAGATCCATTGCTACGACGGGGGACCATCTCCGCATGCGCGGGGAGCACATGTCCTGCGGGGCGTGCGCGGCGG # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25572-25237 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOBF01000038.1 Nonomuraea pusilla strain DSM 43357, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 25571 30 100.0 31 .............................. GCGCGTGGATGTCGCTGGACGTGGCGGTTGA 25510 30 100.0 31 .............................. AGCGACACGACCGACGTCGTCGCGACCCTCG 25449 30 93.3 31 .............A..T............. TCGTACCCGGGGTCGCCCGGCCCCGGGCCCG 25388 30 93.3 31 .............A...............C GCATGGGTGCGGCTAGGGGTGGTCTTCTCTC 25327 30 96.7 31 .............A................ CCGTCGCCGCCGCGCACGCCCCGCAGGACAT 25266 30 86.7 0 .............AT....A.........C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.0 31 GTGCTCCCCGCGCCCGCGGGGATGGTCCCG # Left flank : CCGTGAGCACCTCGACCAGTTCGGCACCGGCCCCGAAGGCCGCATCTTCATCGGCCCCCGCGGCGGCCTCATGACCGACCGCGCCTATCTCAAGGTCTTCCACGAAGCCAGAGCGAAAGCCTTCACCGAAGCAGAAGCCACCTCACCTCTCCTGGACGTCCCCTACGCCCTGCGCCACGCCGCCGTCTCCACCTGGCTCAACGCCGGCGTCCCCGCACCCCAGGTGGCGGAATGGGCCGGCCACAGCGTCAACGTCCTGCTCCGCGTCTACGCCAAATGCATCCACGGCCAACAACACGACGCCATGCGCCGCATCTGGGAAGCCACCAAGCCGGGAACGACAACAAGCTAGGTTGGCCCTGCCATAGCCTGACCAAGAACCGCGCAGGGCCACCAACGACAACCGGAATGACAAGACGAGGCCCTTGCCCGAAATGTCCGAGTCTTCAAAACTGCTCCAAATCACCGCCTGCCGCCTACATCACCGCAGGTGAAGAAGA # Right flank : CGTCGTAGCAATGGATCTTTAGACCGAATGGGTGCCGGTACCCGAGAAGAAGGGCGGGGCCGGCGGGAAACTTGGCCGCGTATTTGCCGCGGAGGGCCGTGGGTCCTCGGTGATGACCATGGACGGCCGGACACAACGAGAGAGGCCCTTCACCGCGTTTCCGCTGGTGAAGGGCCTCTCTCTGCTGGTGTGGCAGGTGCAAGGTTCGAACTTGCGTAGGCTGAGCCGACGGTTTTACAGTCCCGTCGCAACGAGGCTCTGACGTGCAGGAACACGGAAGGCGCAGGGAATTTGGCCGCGTATTGGCCGTGGCACCCCAGCGAGCACCTCACTCCGTTTACAAGGCAGGTCGCTGACGTGCCTGGAGAAACAGCCCCGCAAGCGAAGGAAGCCGTCCCGCATCTGCGGAGAGCGAGACTTCGGCGACGCCATCCAGGCCGTCCTGCGGACCATCCCCGCGTGCGCAGAGAGCACGTGGTGACCTGCCAGCGGTGCCGCGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCCG # Alternate repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //