Array 1 24604-25773 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAH01000066.1 Neisseria meningitidis strain Nm638 Nm638_scaffold_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 24604 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24670 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 24736 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 24802 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 24868 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 24934 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 25012 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 25078 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 25144 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 25210 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 25276 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 25342 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 25408 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 25474 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 25540 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 25606 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 25672 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 25738 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 99.8 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //