Array 1 53872-56048 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAA01000038.1 Clostridium botulinum strain H41 Cbot_69_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 53872 30 100.0 35 .............................. ATGATAAATTGTACTTATCCATTACGGCTTTCATT 53937 30 100.0 36 .............................. TTGATTTTAAATCAAATGCACTTGTTTCTTCTTTCT 54003 30 100.0 34 .............................. CATATTGACCAGTTGCCGATATGATCTCTAACAT 54067 30 100.0 35 .............................. CTGGATATTCTATAATTTACAAGCCATCCGGTAAA 54132 30 100.0 35 .............................. TTATGTGTCAAATAGTCTTTTAAACACTGTATAAA 54197 30 100.0 37 .............................. TGGGGAAATTGTTTTGAGAATTTAGAGTGGCGTGAAA 54264 30 100.0 36 .............................. TAGTTGGTATCTGATCTTTTAAATATTTGTGCTATA 54330 30 100.0 36 .............................. ACATAGAGCATAAAGACAAGCTTATAGGGCGTGGAT 54396 30 100.0 36 .............................. GCCATACCAGTCAACATATTTTTCCATGCTGCTTTA 54462 30 100.0 34 .............................. GCACTTCAAGGATTGAATTTAGTTGATAATCTTG 54526 30 100.0 36 .............................. AAAACAATGGATGTATTTATTCCTTAATTTTAGGAA 54592 30 100.0 36 .............................. GATATTTTAGTTGCATCTTCTGTTTTTAACTTATAA 54658 30 100.0 34 .............................. ATAAAAGGTGAAATGAAGGAAAGTGGAATATTAA 54722 30 100.0 35 .............................. GATGTTGATCTATACAATAGTATAGGCATTGAAAG 54787 30 100.0 35 .............................. GTAGTTATGAAACAATTAATTGATGTGTTACCAGT 54852 30 100.0 34 .............................. AGAATAGAAACACAAGCAGTAGGGTATTTTTATT 54916 30 100.0 34 .............................. AAATACTATTGTATTTAAAGTTAGATATTGTAAG 54980 30 100.0 34 .............................. TGATAAAATTTATACAAGAAGCAAAAATTAATAA 55044 30 100.0 36 .............................. ACAATTTGTTTATAAAGTTAGTAATGGTAAAGTTTA 55110 30 100.0 34 .............................. ATTTAATAGATAAAAATTTTATTAGAAGATTAAA 55174 30 100.0 34 .............................. ACATTAATTTATTTAATGGAGTTCCAAATATACT 55238 30 100.0 35 .............................. ACGTGTTAAGAGTCCAACATTAAAAACAATGGAAG 55303 30 100.0 36 .............................. TTGAATTTGTATTCCCATTATATGAAACAGCGTCCC 55369 30 100.0 35 .............................. TGTGTAAAATCTCCAATCCTAGTAACTGTAAGATC 55434 30 100.0 35 .............................. ACAGGATGCAGATAATTTACAAGTACAAATAGAAA 55499 30 100.0 34 .............................. TATACATACCCCCTAAATTTAAATTTTTAGAAAA 55563 30 100.0 35 .............................. CTTCTAGCCTCTAAAACATATCTATGCGGATCTAT 55628 30 100.0 35 .............................. ATTTGATCGCCGCTAAAATCACTTTGCCATTTATA 55693 30 100.0 34 .............................. TACTTTGGCATAAATTTAATTTTTCATCTTTTCG 55757 30 100.0 35 .............................. AAGTATAGAGGAAACTAAAAGATATCTTGGCATAA 55822 30 100.0 36 .............................. TAAAGTTGGAAGAAAACGTGGCAAAGAACTTACAGT 55888 30 100.0 35 .............................. TACATTTCTGCATATTTCTTATTAAAAACTAAAAA 55953 30 100.0 35 .............................. AGGTCTATCTATTTTTCACCTAATAATAACAGATA 56018 30 100.0 0 .............................. | G [56045] ========== ====== ====== ====== ============================== ===================================== ================== 34 30 100.0 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGATATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAATAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAAAAATTTGGGATAAAGAAAGTGGAGATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATACAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATATTGATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TACCACTGGTTAGACCGGTGGTTCCGGAGAGCTTCTAGCGGTGAGTAGAAAAAAATAATGCCTCCAATGTAAAATAGTAGTAGGTTTGCCGACCACAACTAGAATACATAGGAGGTGCGTCCAAGATGGACAATAGTAGTTTATCACACAGTAAATGGAATTGTAAATATCATGTAGTATTTGCACCAAAGTATAGAAGACAAATAATATATGGAAGATAAAATCAGATATTGGAATAATACTTAGAAAGTTATGTGAACATAAAGGAGTTGAAATTATCGAAGCAAATGCATGTAAAGATCACATACATATGCTTGTAAGTATACCACCAAAGTTAAGTGTTTCACAATTTATGGGATATTTGAAAGGAAAAAGTTCATTGATGATTTTTGATAGACATGCAAACTTAAAATATAAGTATGGCAATAGACAGTTTTGGTGCAAGGGATATTATGTTGATACGGTAGGAAGAAACAAAAAAATTATAGAAGAATATATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 65927-67211 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAA01000038.1 Clostridium botulinum strain H41 Cbot_69_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 65927 30 100.0 37 .............................. AACCATAATATTTCCTTTTCCATGGATACAGATATGG 65994 30 100.0 37 .............................. CTTGTTCAATATGAACAATCCATTATGCAAATTGGGA 66061 30 100.0 37 .............................. GGATCCATAGCAAACAATCCAATTGTATTAACATAAT 66128 30 100.0 37 .............................. ACGTTACTATTCAATGGAGCATTATCTATAGAACTAG 66195 30 100.0 35 .............................. ACGCCTTCAAATTCATTGTTCCCTCTGTACCCATT 66260 30 100.0 36 .............................. ACTGTATAAAATAATCTTCACCACTCCTAGTTTTTA 66326 30 100.0 36 .............................. ATGTCCCATTCATCATTATGATTCTTCTTAGATGCT 66392 30 100.0 36 .............................. ACATAGTATTCATTATATCGGCCCAATTTTGAGGGA 66458 30 100.0 34 .............................. AATATGATCTTTGCGGGTTGCATAAAGTCTTTAA 66522 30 100.0 34 .............................. TCTTTAACCAGTGGGTATTTAGATAAATTATTAG 66586 30 100.0 37 .............................. TTTTTTACAAATATGTTTTTGTTGTTTAAATATTTTA 66653 30 100.0 36 .............................. ATGAAGATAAAAACGGTATAGAATTATATTTTACAG 66719 30 100.0 36 .............................. GAAATAAATAAAGGGTTAGTGGATTGTAATTAAAAG 66785 30 100.0 36 .............................. TTAAAGTGGCTTGCTAGAATACGTGGTAGGATAGGA 66851 30 100.0 35 .............................. AAACAATAAAGATAAAATTTGATTATGAGAACAAT 66916 30 100.0 36 .............................. GAAACAACAGCAAAACTTTCTTGAATTAATTTATAC 66982 30 100.0 37 .............................. TCTATCTGTTTAAAACTACACCTAGAATTAAAATAAC 67049 30 100.0 37 .............................. ATTAATAATGACTTAGGAATCTTTCCTTTTTCAGCCA 67116 30 100.0 36 .............................. CAAGAAAAACAATCTGCTATATTTTCTTTTCTACTG 67182 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 100.0 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : TGATGAGTAAAATTAGTAATTATAATTATGCTTTTGTTTTTTATGATGTAAATGAAAAACGTGTAAATAAAGTTTTTAAAGTATGTAAAAAATATCTATCACATTTTCAAAAATCTGTATTTAGAGGAGAAATGTCACCATCTAAATTAATAAGGTTTAAAAAGGATATAAATTCAGTAATAGATAAAACTGAAGACTTTATATGTATAATAAAATTAATGAATGATAATGTTTTTGGAGAAGAGACATTAGGGGTAACATCAAATGCAACAGGAGAGGATTTAATAATATGAATTATAATAAAATTATTAAATAATTCTATATTTTTACCAGGTTATTATTCTAATGAAGTCATTTAAAAGGTAGGTAAACACAAGGATTCAGCAATGCTGAATAAGGTTTATTTAATATGTAAAAATCACTTGGTAAAATTTTTATAATATGTTACTATTACTGTATTAGAGAGATTTTGTTATTTTAAGAATGGCTTATTTTCAATG # Right flank : ATATTTTTGTTACTAGTTCCAACTAAATTTTCTCTCGATTAACATTAACATGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 439-1387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAA01000037.1 Clostridium botulinum strain H41 Cbot_69_contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 439 30 100.0 36 .............................. TTTTTCTTGTCTTTGCATTGAGCCATTAGGTCCTTT 505 30 100.0 36 .............................. TTAATGGAAGAACGCTATACTGGTGGAGCTGAAAAG 571 30 100.0 35 .............................. TTTGTGCTGCAAGAAATTCTTTATGCTTGCGTTTT 636 30 100.0 34 .............................. ATATGTTTATCTTTAAGTGTGTTTTCTTGTGTAA 700 30 100.0 36 .............................. AATTTTATTTATTAGTGCTGTAAATAGTTCTTATTT 766 30 100.0 36 .............................. CAATATGCAGATAAGAGGTAAGACTTTACAGAATTT 832 30 100.0 37 .............................. TCAAATAGCATTGTTATGGGTAAGCTATTGTTTGTAT 899 30 100.0 34 .............................. ATAGATAATAACAATTCGTTGTTAACCATTGATT 963 30 100.0 37 .............................. GGTATAGACAAATCCTCTCCAATTCTAGTTCTTGTTT 1030 30 100.0 36 .............................. AAAAATGGCTAGTGATTTTGAAACAAGTTTTGCAAA 1096 30 100.0 35 .............................. CTAGGAATGAAACACAGGCAACCATATTAAATATG 1161 30 100.0 35 .............................. CCATTACCGTTATATTTAACTAAATCTCCAAATAC 1226 30 100.0 37 .............................. TTATTTAACCCTCCTCATATTATTAATTGATTATCAT 1293 30 100.0 35 .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 1358 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : ACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTTTATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACCCTTAGAATTTAATTATCTTAGGTGTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAACTAGAATTGTAAAAATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTGG # Right flank : TAGAGCATTAGATAGTATTTTTATTGCCTTGGGAGAAGGTTTAACCTTAAAACATCCTTATAGCTATAACTTAGTTTTGTAGCTATAAGGATGTTTTTTTACTCTTAATAATGTAACAAAATATGTTATACTTGAAAAAAACAAATTGTAATTTGCATGGGAGAATACAAAAATGAGCAAATTGACTAAATATATTGAAGATTTAAGAAAAAAGTATGGGGATGCAATAGTAACAAAAGAAAGTCATTATGATAATATGATGCTTTTAAAGGTACCTGAGCCATTGAGGGAATTTTATAAGGAATATGAAAGTTTAGAAATGCCTTTTGGAATTATTGACTCTATCGAAATCAGTATAAGATCTTCAGAAGCAGAACCCTTTAAAAGTGAAGGCTGGTTTTCATTTGGTACAGATAGATATTTTTCCTTCTGGCTATGTGCTTATAAGGTAGATAATTATGGTAATTCTATTACTTCATGGGATCACGATATAGATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 5082-6685 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAA01000037.1 Clostridium botulinum strain H41 Cbot_69_contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5082 30 100.0 36 .............................. TCTATTAAGTCAAGTTTTTTCGTTATTAGAGAGTAA 5148 30 100.0 34 .............................. GGAATTGCACAAAGTTATATTTCTGAAATAGAAA 5212 30 100.0 35 .............................. AAAAAATATCACAACATGATTTCGGAAAAAATATA 5277 30 100.0 35 .............................. AAAACTAGAGATGGTTGTACAGGAACAGGTATTAT 5342 30 100.0 36 .............................. CAATCCAAACTGGAGAGCTTAACATCTTTAGAAGAT 5408 30 100.0 36 .............................. TAATCTATTATATAGCTCTCAACAATCCATTCTAGA 5474 30 100.0 35 .............................. GTGGCAGTGATGATAACTTATCTGTTGTTGCTACT 5539 30 100.0 35 .............................. AGAAGTACAAATTGATTAGTTAACTAAAAAAGATG 5604 30 100.0 36 .............................. GAATGAATCTAATATTAGAAAGAAGTAAATATAATG 5670 30 100.0 35 .............................. CATTGTGAAAAATGCGGTTGTCCAAATGAAATTAC 5735 30 100.0 35 .............................. TGTAAGTGATACTATTAAGCATATTACCAGTATAG 5800 30 100.0 38 .............................. ACAGCAGTATGTGCCATCTGTAAAGATTTTCCCGAACC 5868 30 100.0 34 .............................. ATGCAATCTGTTCAAATATAGGATTGAAAGAAAA 5932 30 100.0 36 .............................. TCGCTATATTAAAAAATACATTTAATACTTCACTAT 5998 30 100.0 37 .............................. ATATAATATCCTTTCTTTGGTTTTGGATTCTCTGTAT 6065 30 100.0 37 .............................. ATAGAAATGGAACTTTTATTAGGAAGTAATATTTCTA 6132 30 100.0 35 .............................. TATATATCCCAAGCTTCATCTGTGTCTAGTATTTT 6197 30 100.0 36 .............................. GATTCTAATAATTTATCATCAAGTTCTATTACTTGG 6263 30 100.0 34 .............................. ATATTTTTTGGATTGGTTTTAGTTGTTAATATAG 6327 30 100.0 36 .............................. ATGTTTAAAGTTCCACTAGATGATACATTTAAGTAC 6393 30 100.0 35 .............................. GTTATTCAACCAAAATGGATTTGTTGGGATAAAAA 6458 30 100.0 36 .............................. GTTAATGATCCACGCTTAATGGATGGCACTTCTTCC 6524 30 100.0 36 .............................. ATAATTCAGCAAAGTAATGATAATGTCGATATTAAA 6590 30 100.0 35 .............................. AGAGCAATTCCTAAATGTTTAGGTCTTAGTATACT 6655 30 86.7 0 .C...............T.....G.....G | G [6682] ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.5 36 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : GAAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCGAAAAATAAAGAGATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACAGCGCTAAAGTGACCTTTTAAAAATTTTCTGAAAATTTTATAAATGGCTGGGAAAGTTTCATTGAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : GAAAAGGGCATGCTAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATGCAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTAAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTGCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATCATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGATCATGCGTATAAAGAAGGTGAATTTGATCGTACACTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGAATTTACAGAAGATATGCTTGTGGTTTGTGAAGAATTTAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 53-1970 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAA01000039.1 Clostridium botulinum strain H41 Cbot_69_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 53 30 100.0 35 .............................. CCAGGTTGACCTGATAATTTAGTATCTAATTTAGC 118 30 100.0 36 .............................. TTTAATGCTTGTATGTCTTCCTCACTTATTTTTTCT 184 30 100.0 34 .............................. CCTTTACCATTATCATCTGTTCCATATACCTCCG 248 30 100.0 34 .............................. AACTAATAAAGAACTTTTATTAAAGATATACGAA 312 30 100.0 36 .............................. TATTTTGTAATGTTGCCATAGCTTTGCTTTGTGAAT 378 30 100.0 35 .............................. TTGAATTAAGATTTCCTTTAGGCGCTCCGCCACCT 443 30 100.0 35 .............................. AAGTATACAACACAATCTCCACCTTTATATGCGTT 508 30 100.0 35 .............................. CTATATCCACTATTTTTATTTTGTTTTGGATTATT 573 30 100.0 35 .............................. TCTATTATTTCAGCTAATGTCTTATCTTTATAAAT 638 30 100.0 35 .............................. AGAATTATATGGAGCTATACAAGTTAAATATCAAA 703 30 100.0 36 .............................. GAAATAGATGAACGTGGAAATATAGTAAAAGGAAAT 769 30 100.0 35 .............................. AATACTAATTTATATAATTCAGTTAAGGCATGGTG 834 30 100.0 36 .............................. ACATTTCTATCTGTTCTATACTTTAAATATTCATTA 900 30 100.0 34 .............................. TCTTTTCGGCTTCCTCTTCTTTTTTTAAACAAGG 964 30 100.0 36 .............................. ATATGCAAATAATCATAAAGGTGTTTGCTTGGTTTT 1030 30 100.0 35 .............................. CTGAAGAAGCTACTTTAAAAGAAAGTATAGATAGT 1095 30 100.0 36 .............................. GCAAAAGATATCCTTGTAATTTTAGCCGATTCGCAA 1161 30 100.0 34 .............................. GAAATGGCAAGACTTGTTACATTAGAGATGGAAA 1225 30 100.0 34 .............................. TTCCCCTTTTATAATAATATTTAAGTTCTTTTAA 1289 30 100.0 35 .............................. TTAATTTTCTCTTTGTTTATGCTCCAACTATTATA 1354 30 100.0 35 .............................. CTTGTTATAACTCCCGCAGTTGCCTCTAAAAAAAC 1419 30 100.0 35 .............................. AAGTATACAACACAATCTCCACCTTTATATGCGTT 1484 30 100.0 36 .............................. CCCTTTCTGACTATTGTACATTTAAAACTTTAACTA 1550 30 100.0 36 .............................. ACTTCCCAATCTTTAGTGTAAACATCGTTTACCTTT 1616 30 100.0 36 .............................. GGCCACATTCTTTTGTCCCACAGTTTACCACGTAAG 1682 30 96.7 35 ................A............. TCTTGAATAGTAATATAATCATAGTTGTTTAAAGT 1747 30 96.7 35 ................A............. CCTTCAATTAGTCCCAATGTTTTAGATTCTAATCT 1812 30 100.0 35 .............................. TCTCTTTTAAAACTTATAGGAATTTTCATTTTGTC 1877 30 100.0 34 .............................. AATAGCAGGCAATAGATTAGCACCAATAGGGTGT 1941 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ==================================== ================== 30 30 99.7 35 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : CATGGGATGTATTTAAATTTATTATTATGACTAGATGGGCCAGTGATGATTTG # Right flank : TCCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAGATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //