Array 1 15439-16850 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJQW01000011.1 Staphylococcus pseudintermedius strain MAD656 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15439 36 100.0 29 .................................... GGAAGAAAGGAAGTATGATGAACGCTTAC 15504 36 100.0 29 .................................... CCAATCCCCTAATAAATATCGGGAAACCG 15569 36 100.0 30 .................................... GGTTAAAATAGTTTTTTGAAGATTGAAAAT 15635 36 100.0 29 .................................... CAATCAAGTGCAGATTTATCAAAAAAGTT 15700 36 100.0 29 .................................... ATTAATGGAAGCTGTTAAAGCTAGGATAC 15765 36 100.0 29 .................................... TCATTGTAAAAGAATCCTTGACGATAGCC 15830 36 100.0 30 .................................... ATCTTCACTTGTCATAACGTAAAGGTTTAC 15896 36 100.0 30 .................................... TTGATATCAGAAATCAGAACATTCAAAAAA 15962 36 100.0 30 .................................... AAAAATGCTTGGTCTTTACTGATTGAAGTT 16028 36 100.0 29 .................................... AACTGTCAATAATACCCCCTACAAGATGT 16093 36 100.0 30 .................................... GGCGCCTTATCGTTCAATTAATATCAATAA 16159 36 100.0 29 .................................... TGTACATTTAAACGATTTATTCGGTCAAG 16224 36 100.0 29 .................................... TTGTGAAGGAAAAATCGACTTCACGTTGG 16289 36 100.0 30 .................................... GACTTGCGGTGAACGTTGAATATCTTTTTT 16355 36 100.0 29 .................................... AGACATACTAACTAAAGTGAAAGAGGTGT 16420 36 100.0 29 .................................... AACTGTCAATAATACCCCCTACAAGATGT 16485 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 16550 36 100.0 30 .................................... AAAGAATACTATAAAGAGCAAAGTAAATAC 16616 36 100.0 30 .................................... AAATAGATGAGGAAACTTTTAATAGTATCA 16682 36 100.0 30 .................................... GTAAACACTGTTTATCATGTTGAAGTGGCC 16748 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 16814 35 86.1 0 .........T................-.CA.C.... | TC [16847] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.2 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 60317-61422 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJQW01000038.1 Staphylococcus pseudintermedius strain MAD656 1a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 60317 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 60389 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 60459 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 60531 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 60601 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 60671 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 60744 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 60815 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 60889 36 100.0 37 .................................... TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 60962 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 61033 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 61105 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 61177 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 61248 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 61317 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 61388 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 99.1 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATAATCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 70385-70146 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJQW01000038.1 Staphylococcus pseudintermedius strain MAD656 1a, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 70384 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 70315 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 70241 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [70233] 70169 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //