Array 1 2390-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXHA01000171.1 Xanthomonas oryzae pv. oryzae strain IXO725 contig_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2389 31 100.0 35 ............................... TGTAATACAGCTCCGAGCCTTCAACAACCTTTGCG 2323 31 100.0 34 ............................... AGCTCAGTCAAAGGCTCCGGCACTTCAACCGGGA 2258 31 100.0 34 ............................... TGGTGCAGATCCAAGGCGGGCAGAATCCCCTGAC 2193 31 100.0 36 ............................... AAGTGAGTAGTTGACGATGCTGGCGGGAACGCCTGC 2126 31 100.0 35 ............................... TTTGTCACGGAGTGCATAGAGCAGGTCAAACTTGC 2060 31 100.0 36 ............................... CAATTTTTCCCAGACAGTTCGAACACCAGCTGGACC 1993 31 100.0 34 ............................... TCCTCTTTGTTGAAAGTGTTGTTAATCTGCTTGC 1928 31 100.0 35 ............................... AGCGTATCCAGGCTGAGTGCCTGCTGTAAATACAC 1862 31 100.0 35 ............................... ATCCACTCGCCGCCGGTTCCCTGCACAGGGTAATT 1796 31 100.0 35 ............................... GTACCAGATCCAAGCCCCGTCGGCGTCCATCGCGA 1730 31 100.0 32 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTGGC 1667 31 100.0 35 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATG 1601 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1535 31 100.0 35 ............................... CTGCGCAGCACAACAAGTGCATTGCGGTCAGAGGT 1469 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 1403 31 96.8 35 ............A.................. TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1337 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1272 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1207 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1142 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1076 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1010 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 945 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 880 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 814 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 748 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 684 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 617 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 552 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 487 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 420 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 355 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 290 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 33 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAACCTGCCCTTCAGGCTGTCCACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //