Array 1 659529-657848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051674.1 Weizmannia coagulans strain CGD018 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 659528 30 100.0 36 .............................. AGGCTTGATCCAAAGTTAAACTCTCAATCGCCTCTG 659462 30 100.0 36 .............................. TTTGGCATAACCCATTGGTCTGTCTTCACTTGCCTA 659396 30 100.0 35 .............................. ATTTTTACCCATGCACCGTTGCAAGGAACATTTAG 659331 30 100.0 36 .............................. CATGGACAGGCGTTCAGAAAGCTCTGTCCGGTATTA 659265 30 100.0 37 .............................. AGGGTGTAAACTGGGTTTTAAAACGGGTAGGTGCTAA 659198 30 100.0 38 .............................. TACCTATAGCTTTTTATACCAAATCAAAAATGTGCACC 659130 30 100.0 36 .............................. CTTTTTTTGCCACAGTATGGGCAAATTACCGTTTGC 659064 30 100.0 36 .............................. ATATCCGGCCGCGATCAGATCCTTTGCCTCCTCGCC 658998 30 100.0 37 .............................. CCCAGATACTGTACATTTAGTTGTAAAACGGTATAAA 658931 30 100.0 37 .............................. AGGAGTGGTAGCCACGTACCAGTCAAACTGCATTTGT 658864 30 100.0 35 .............................. ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTAT 658799 30 100.0 35 .............................. GCATTTCCGCCATGGCCTGTTTTTCCGTGGCGTGC 658734 30 100.0 37 .............................. ATTTTTACCCATGCCCCGTTACAAGGGACGTTTAATT 658667 30 100.0 35 .............................. TGAAGCAGGCCGAGCGCTTTCGTGCGCTGCTGGGC 658602 30 100.0 38 .............................. TCCCACTCTATATTGGATACATCACCGACCGGATGAGC 658534 30 100.0 36 .............................. TCCCCTACGCCTTTTATGCTATTTTGTAAGGCGCCC 658468 30 100.0 37 .............................. AAATGCTTACAAGCACTAAATCGCACCCCCAAACAGA 658401 30 100.0 35 .............................. CGAAAATGCAAAAACTGGAGATAATCAAAAAGCAA 658336 30 100.0 35 .............................. TTAAAAAAGCTGGAGTAAGGCATATCCGCCTGCAC 658271 30 100.0 35 .............................. ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTAT 658206 30 100.0 35 .............................. CTCGCTGTGACATAGTAAGGCGTTGTTTTTGCCGT 658141 30 100.0 35 .............................. TTCGTTTGAGTCTACTAGCTGGACGCGATATTTTT 658076 30 100.0 38 .............................. GCGACTGTAAAACTAGAGTTGATACGATATAAACCGAA 658008 30 100.0 36 .............................. GCAGTATTCCAGTCAGTAAACACGTTGGAAAATACC 657942 30 100.0 35 .............................. AGACAAAGAGGGAGGCACAAATTGCCGCCGCCGAA 657877 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.9 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : AGTCAAAATATGGATTCTCGATGGGCAAGATTTCAACGCATTCATTTGACGCCAACCAAATGGATCTGCTGATTAAACTGCTGGCATACAATTTATTCGAGATCTTTAAAAAAGAACACTGTCCGCCAGCGTATCGCTCTTATACGATCAGGCGATTCCGGAGGGAATTCATCTACGCGGCTGGCGTGCTGGTCTATCACAGCCGAAGTGTCATTTTAAATATTTGTGAAACATACGCCCATAAAAAGGCATTCCGGCAAATGATTCAAAGTGTACGGCTGATTGACTGAGTGTGAAGGCTGAAACAGAATACTGGAAATTGAAACGCCCGCAAATGTGGGGAGGGGGCAACTGTGGCCTTAATAACCCAAAAATAGGCAGTTGTGATTCCATTTTTGATAATATTATCCATTTATTTTCCATATGATTCCAATTACCTGCATCAATCTAGTAAAGTTTTGCACTTTCTTAATTTGGGATAATATCAGTGAGTTTTTGGA # Right flank : ACACTCAATATAGCCAGTGGGAAGTTAATTTCTATTCTGAAAATATGTGCCGACTTGATTTTCATTCACCCGCTGGTGTCGCGTTCACTGCGGCACGGACTCCTAATTGAATAAGAAATAAGTCACTTTCACAGTCTATCCCGCTGAATCAAATTTAACGGCTTTCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATAAGTAACAAAACTCTTGGAACAAGAGGGATAGCTCGGTCAGTTTTCGTTGGCTAGTAAAAGCAACGATAAGTCAAGAAGCCCCCACTTCAATTAGACCGCAAGGTCAATAAGTGGTGGGTAGTTCACTTCTGAAATCACGAACACACCTGCCATGCGAAACAAATTTTGCAATCATGAAACAGGAAAAATCATCTGAAAAATCGTAAACTATTACTCGAAGGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1473425-1478722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051674.1 Weizmannia coagulans strain CGD018 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1473425 32 100.0 34 ................................ TAAACTATTGTTACCAGTCCACCCGCCGACATAA 1473491 32 100.0 34 ................................ CGTACGAGGAAAACACGTTCTTACTAAGTGGGGA 1473557 32 100.0 32 ................................ AGGTTACTTTTAAAGTCGTAAACTCTCCCGAC 1473621 32 100.0 34 ................................ TTTGGATACTGCTGGCGGGACTACGTCGGATAAT 1473687 32 100.0 33 ................................ TAACAGCTTGTTATCAACCGTGTTTCCTATACG 1473752 32 100.0 34 ................................ TTGCCTATGCTGTACAGACTCATAAACCGCGGCA 1473818 32 100.0 33 ................................ CTTATGATTTAATTATAGCATGAATGTATTTAC 1473883 32 100.0 33 ................................ GCCGTTCACCTTTAGTGCGAACAGCCCTTTTGC 1473948 32 100.0 33 ................................ AAGTATTTTTTTGCGTGTTGACGTGTTGGCGGT 1474013 32 100.0 34 ................................ CCTTTGTTCTTTCGCTATAATTCTATAATTATCC 1474079 32 100.0 33 ................................ CACTTAGTACTATGTTAGGCATTATGGTGACGT 1474144 32 100.0 34 ................................ TATCTTTTTCCGCGCAAATTTAGTGAACTTGAAC 1474210 32 100.0 33 ................................ TTCGCTCATCTCACTGCTTTTGTTGTAAGTGGT 1474275 32 100.0 33 ................................ TTTAACCGGTAGCAGTTGGCGTGCTTCATCATT 1474340 32 100.0 33 ................................ CTTACGAAATGGAAAGGTTTGTAAATTGAATTC 1474405 32 100.0 34 ................................ CGGCATCAAAGTAACTAAAGATGTAGCGGATCCT 1474471 32 100.0 34 ................................ TTATCCCTTATAACAATCTTTATGGATAAGTGCA 1474537 32 100.0 33 ................................ AAAGTCTGGATGTGCTGTTCTATCTTTTTCCGC 1474602 32 100.0 34 ................................ ATACTATGCAGCCTGGTATATTCCGGGTCAAAAG 1474668 32 100.0 34 ................................ CGCCACCAGTTATCCAGTTGAAAAAGGGTCGCCA 1474734 32 100.0 33 ................................ TTTACAGTGGATCTTTATGATGCAAGCTTGAAT 1474799 32 100.0 34 ................................ TAATGTCAGCGCGGTTGTAAATCCAGAGCCAACC 1474865 32 100.0 33 ................................ TTATTACAAAATATTAATCCGAACTCGAGGGAG 1474930 32 100.0 34 ................................ GTATATCTCCTTGAAGTTCCAGTCGACCTGCACA 1474996 32 100.0 34 ................................ GCTCGTGCAAATGGTGATGGCTGGCGGAATTGCT 1475062 32 100.0 34 ................................ AAAAGTAGATCTGTACACAGGATCCCATTTTTAC 1475128 32 100.0 33 ................................ TACGGTGATGAAATGAGAGATTTACTCCATAAA 1475193 32 100.0 34 ................................ CTGACTCAAGGCATATAGTTGCATGGGTATGTCT 1475259 32 100.0 34 ................................ GAACCAACGCTGAAATAATTCCGATACAGTGATA 1475325 32 100.0 34 ................................ ATCTTGCATTGCCTGTTGCTGGATCTCGATACTG 1475391 32 100.0 34 ................................ CTTGGGGGATTCCGTAGCGCGTATAGTCCCAATC 1475457 32 100.0 34 ................................ GTGCGAGCATGTGAACGCTTTATCCTCATCAATT 1475523 32 100.0 34 ................................ ACCGCACGCTATTTCGCCTAATATTGGTACATAT 1475589 32 100.0 34 ................................ CAGGCGCTGGTACCGTCAAGTTCTGGGAGTTCGT 1475655 32 100.0 34 ................................ TTATAATTTTGTTAGCAGGCGTTCCCAATTGTCC 1475721 32 100.0 34 ................................ CAATTGCTACCGTCCCACCATTCATATACCATTA 1475787 32 100.0 34 ................................ CCGGCCACAGATACGCTGGTTAACCTGCCGAAAG 1475853 32 100.0 34 ................................ CCGGCCACAGATACGCTGGTTAACCTGCCGAAAG 1475919 32 100.0 34 ................................ CTCAGCCGGTTCATCGTCTTCCACAGCTTCTTTC 1475985 32 100.0 34 ................................ ACTCCCTCACATTAAAAACTTTTGCACAAGGCTA 1476051 32 100.0 34 ................................ TTCCATATCTTTTTCCTTCATCGGATCAACAAAT 1476117 32 100.0 33 ................................ GCCAATCCCGCCTGTAGAATTATTCCACCCGTC 1476182 32 100.0 34 ................................ CATGTACTTTTCTACATCTCGGCCAATCTTTTTT 1476248 32 100.0 34 ................................ AATTTCGCCGGCGGTCAACAGAATCGGGCGAAAA 1476314 32 100.0 35 ................................ GCCAATCCCGCCGGTAGAATTATTCCACCCGTCCC 1476381 32 96.9 34 ........................T....... ACTTGTGATTATTACTTATAACATTACTTTATAT 1476447 32 100.0 33 ................................ TTTTGATAAGCCGTATGGCGGGTCTGTTACGAC 1476512 32 100.0 34 ................................ ATAAAGGAAAGTTTGAACGATGAAGGAAAGTACC 1476578 32 100.0 35 ................................ CGATTCCTTGTATGGCTTTCTTAGTACCAGACATG 1476645 32 100.0 34 ................................ AGTAGGAGGTTTATGATGATACAAATTTTTACGG 1476711 32 100.0 32 ................................ ATTCCCTGTATATCTACTTGCAATTTCATCGC 1476775 32 100.0 34 ................................ TTTCCTCAATCTTTTTATTTTTTCTCCTGGCCTC 1476841 32 100.0 35 ................................ CAAACGTTATCTCCAATATTTTTAAGTTTGTCCCA 1476908 32 100.0 35 ................................ CAAACTGCTTGACGTTGACCAGGTCACGCGGTCAG 1476975 32 100.0 33 ................................ AAAATCCATCGCTGACTTTGTCGCCAGTCCAAG 1477040 32 100.0 36 ................................ CTTGTTTATCTTTCGAAATAAGCTCCAGAACGCAAT 1477108 32 100.0 34 ................................ TTTCAGCCAAACGTGACTGCGACCGGTGCGCTCT 1477174 32 100.0 33 ................................ AAACTTGGAAACCGTGATAGCAACCTCATCGGA 1477239 32 100.0 33 ................................ CACATCAACGCGGCTTTCGGCCGGGGCAACGAT 1477304 32 100.0 34 ................................ TGATAGTGAGGTTGCACAGAACCCACTATTTTTT 1477370 32 100.0 35 ................................ TTTTTCGGCGGGAGCCGGCCTGTCCACCCGCAGAC 1477437 32 100.0 33 ................................ CTGCATAGCCTGTTTTTCCGTGGCATGCCAGCT 1477502 32 100.0 34 ................................ CGGGTCGATCAGGTACACGTATGCCTTCGAGTTG 1477568 32 100.0 34 ................................ ACGATGCCTCACCTTCCTGGTCGCGTTCGATGAT 1477634 32 100.0 33 ................................ TTCTAGGATTAACTCCGGAGGATATGCCGCCAG 1477699 32 100.0 34 ................................ ACCTTCCCAATACACTGTATTATCAACTGCAAAG 1477765 32 100.0 34 ................................ CCCATCAAGTAAAAGCAGTTGAAAAGCTATCGAA 1477831 32 100.0 34 ................................ CGAAATGATAAGCAATCCCATTCTTAATGTAAAA 1477897 32 100.0 34 ................................ AATGATGCTGACTAAACGTGACCGCGCCATTATT 1477963 32 100.0 35 ................................ CTGTTGATAAAGCCATTGGCCAACAATCAGCGCAC 1478030 32 100.0 33 ................................ CACAGAAGCAAACCAAATGGCTTCCAGGCTTAA 1478095 32 100.0 35 ................................ CAACGTTTCGCCTAACACCGTCGCGCCACCTCCGG 1478162 32 96.9 35 ...T............................ CTCCTCGAAGTAGGCGACAGCTTGAATGACATAAA 1478229 32 100.0 33 ................................ CTTCCGCCAACTTGCAAATTATCGAGATTAGTC 1478294 32 100.0 34 ................................ AGTATTGGAAAAGTAGCCATGGGATCCGCGACAA 1478360 32 100.0 34 ................................ GGTATCAAATCCGTAATCTTCGAGAGCCTTATTT 1478426 32 100.0 34 ................................ CGACATAAGCTAATACCGCCGGAATCCCTGCCAG 1478492 32 96.9 33 ............A................... CAGCAAAAAACAAAACCGTGGGGGCCTTACCCC 1478557 32 96.9 34 ............A................... CTTTTGATAAATGCATTGCACGACCGGATGAAGT 1478623 32 93.8 34 ............A......A............ GTGAATCCAAAAGGTAGATAAAGAAACCTATGCC 1478689 32 78.1 0 ..........G.A.......A..A.A.A...C | G,A [1478692,1478704] ========== ====== ====== ====== ================================ ==================================== ================== 81 32 99.5 34 GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Left flank : TGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAGATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCTGGGCAGAAAAGGCTGAGAAAAGTGGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTTCAGAATTCTGTCTTTGAATGCTATGTTGATGCAACTCAATTTGCATCTTTGAAGATTGAACTGTCTAATATTATTGACCCGGACGAAGATAGCTTGAGATTTTATCAGTTGGGGAATAACTATAAAAATAAAGTAATGCATATTGGGGCAAAACCATCTTTGGATTTAGAGGACCCATTGATCTTTTAGAGTGCGAAGGTGTAGCGCACACGATTTTTCCTGTGGGTTCGCACCATAATATTAACCAATATTTTACATATATTGGTCTTGCTTGGTAAATAGTTCTTTGTTTTATCAGAGGAAATAGCGGAATTTGGTTGTTTTGAAAACACACATTCGCATTTTTTGCCAAATTCCGCT # Right flank : CAACATCCACCAAATAGAAACAATTTTTGATCTTTTCTAAAACTTAACCTTTGATGCAACGCTTGGCATTCCCGATGGAATTGAACAATTATTGCTGCCAGAAGTGCTGCCGGTAATAATTCCGGTTCCTACTGTTCCATGCAGCCTTGCATGCAGCTGCCTGGCCAGAAAGAAAAGAGCCCAAGTCCCGCCTGCAGGAATAATAAAACAGAAGCAAGCAGCCCTGCCCAAAAAAGATTTTAAAGTTTTTCCCATTGAAGGCTTGCTGAGCGAACCAGACAAAGCTTTATCTCTGGTTCGCTCAGCCGCAAAACTGGTTGATGCCGCCTTCTTTTTTCTTTAAATCCAAAAAGAGGCGCAGATCGTGCAGGCAGCAGTGACAAACCCTCTTTGTGAAATTGCCCTTGTTTTTATAGTCCCCCGAACCGGGTCCAGGGCTTTTGCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCATCGTCCAGTTCCCTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //