Array 1 108375-109146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLP01000003.1 Campylobacter sp. RM9261 RM9261contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 108375 37 100.0 35 ..................................... AAGAATGTCCTTTATCGACTTTAATTTCGCATGGT 108447 37 100.0 34 ..................................... ATTATCATAGGTGCTGTTTTAATTGCATCTGCTT 108518 37 100.0 36 ..................................... ACATTTGTGATTTGCTCATTTACACTTGTAGCTAAT 108591 37 100.0 39 ..................................... ATAGTAGAAAAATACCACTCTTCAAGCTCTTTAAAATCA 108667 37 100.0 35 ..................................... TCCATATATACAGTATCATCTTGTCCTAAAATACC 108739 37 100.0 36 ..................................... GCCTAAATTCTCTTTTTTATACTCGCTAATTGCCTC 108812 37 100.0 37 ..................................... CTAACGGATAAAGGAGTTGCGGTAGTTCCATCTTTTG 108886 37 100.0 36 ..................................... TAGTTTGAGCCTTTATGCTTTAGCTCTGTAATTCTA 108959 37 100.0 38 ..................................... AAAAGAGCCAAGTTGGGATAATTTAACAAAAGTCTTTA 109034 37 100.0 39 ..................................... ATGGATTTAGTTAAACCAGCCATAACTGCATAATGAGCG 109110 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.8 37 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGTAAACATTTTAATAAGCCATTTTTTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTTAAGATATTTGATATAAAAAACGATGATTTAGCTCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGTTATTTCCACAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATAATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAACTAAATTTTTCCACAAATTTGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACCTCTAAACCATAGCCAAACGCCCATAAAATAGGCTAAATTTGGCTCA # Right flank : ACAAATCTAAACATCTAATCAAATTTAAATATTATCTACTATTATATTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAGAAGTACTAAGAAATCGAATAATACTATCTTTATTTAATGCATTTTTGCCAATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATCACCTAGCTTTCCATCACAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGGAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCACTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATTAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 6845-7606 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLP01000001.1 Campylobacter sp. RM9261 RM9261contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6845 36 100.0 31 .................................... TTTATCAATCTTTACATCTTGTAGTAGCTGT 6912 36 100.0 31 .................................... CCAAAAAAGCAAAAATGAAACTAAATAAAGG 6979 36 100.0 29 .................................... CGCAAACGGGCAATTAACAAATAAAAATA 7044 36 100.0 30 .................................... TGAAAATGTATATACATTTGCTGGTCTTGA 7110 36 100.0 30 .................................... TCGTTTTATATTGACAACAGTAAAATTTTA 7176 36 100.0 29 .................................... CAAGCAGAGCAAGAAGCGGAACAATTAGA 7241 36 100.0 30 .................................... AAGCGGTTTTATTAGAGATGGAGAATCAAA 7307 36 100.0 31 .................................... TACAATAAAACAGCTGATGAAGATGAGTCTG 7374 36 100.0 30 .................................... TCAAATTTTGATCAATATTTTTTTCTATTT 7440 36 100.0 30 .................................... TTGGGACACTTGAAATACCATCAAGACCCT 7506 36 100.0 31 .................................... CTGCATATTCACCATATTTTACTTTTTCTAT 7573 34 80.6 0 .....................--..T..T....GAT | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 98.4 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTGCGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGACCTAAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAAATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TTAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAATGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCACACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACCGATTTTGGAGTAGGAGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGCGACTGACTAAAAATGGCTCTTTAAATTTAGATAATGAGGGTTATTTGGTAACTAAAGAGGGTTATAGAGTTTTGCCTGCAAATTATGAAG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //