Array 1 24-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAO01000580.1 Salmonella enterica subsp. enterica serovar Onireke strain BCW_2750 NODE_580_length_701_cov_2.46708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 85 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 146 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 207 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 268 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 329 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 390 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 451 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 512 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 574 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTATGCTGAATTACAGGAAGGCG # Right flank : CCCCGGCCTGATCTCGATCGGTGACGTAGGCAGTGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6693-7941 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAO01000078.1 Salmonella enterica subsp. enterica serovar Onireke strain BCW_2750 NODE_78_length_16505_cov_4.31943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6693 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 6754 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 6815 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 6876 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 6937 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 6998 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 7059 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 7120 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 7181 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 7242 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 7303 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 7364 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 7425 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 7486 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 7547 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 7609 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 7670 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 7731 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 7792 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7853 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 7914 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAO01000087.1 Salmonella enterica subsp. enterica serovar Onireke strain BCW_2750 NODE_87_length_15036_cov_3.88172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 110 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 171 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 232 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 293 29 96.6 0 ............T................ | A [320] ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATATTTGCATGGATAGTTGTGCGGCAACGCCCGTTTTTATCGGTGGACG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //