Array 1 9448-10569 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPFD01000014.1 Mycobacterium tuberculosis strain 2462C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9448 37 97.3 33 A.................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCT 9518 37 100.0 34 ..................................... TTTTCTGACCACTTGTGCGGGATTAGCGGGCTTA 9589 37 100.0 38 ..................................... AACACCTCAGTAGCACGTCATACGCCGACCAATCATCA 9664 37 100.0 35 ..................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCA 9736 37 100.0 36 ..................................... TTAAAACCGTGTTGCACTGCAACCCGTTGACTTCCG 9809 37 100.0 34 ..................................... ACTCGGAATCCCATGTGCTGACAGCGGATTCGCC 9880 37 100.0 36 ..................................... CATAGAGGGTCGCCGGCTCTGGATCACGGCCGCCTA 9953 37 100.0 40 ..................................... ACCAATGCGTCGTCATTTCCGGGCTGGGATGGTCGGCTCG 10030 37 100.0 35 ..................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACG 10102 37 100.0 24 ..................................... CTTGAATAACGCGCAGTGAATTTC Deletion [10163] 10163 37 91.9 35 .CGG................................. ATGGGATATCTGCTGCCCGCCCGGGGAAAATCGCC 10235 37 100.0 35 ..................................... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGA 10307 37 100.0 40 ..................................... CCGGCAACAATCGCGCCGGCCCGCCTGGCGGCCACGGGTC 10384 37 100.0 35 ..................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGT 10456 37 100.0 40 ..................................... TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCA 10533 37 94.6 0 C.........................A.......... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 99.0 35 GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAG # Right flank : CTCGTCGACGATCGCGTCGATGTCGATGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGGTACCCGCCGGAGCTGCGTGAGCGGGCGGTGCGGATGGTCGCAGAGATCCGCGGTCAGCACGATTCGGAGTGGGCAGCGATCAGTGAGGTCGCCCGTCTACTTGGTGTTGGCTGCGCGGAGACGGTGCGTAAGTGGGTGCGCCAGGCGCAGGTCGATGCCGGCGCACGGCCCGGGACCACGACCGAAGAATCCGCTGAGCTGAAGCGCTTGCGGCGGGACAACGCCGAATTGCGAAGGGCGAACGCGATTTTAAAGACCGCGTCGGCTTTCTTCGCGGCCGAGCTCGACCGGCCAGCACGCTAATTACCCGGTTCATCGCCGATCATCAGGGCCACCGCGAGGGCCCCGATGGTTTGCGGTGGGGTGTCGAGTCGATCTGCACACAGCTGACCGAGCTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 23366-22665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPFD01000038.1 Mycobacterium tuberculosis strain 2462C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23365 37 100.0 37 ..................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATA 23291 37 100.0 35 ..................................... CAGCGAAATACAGGCTCCACGACACGACCACAACG 23219 37 100.0 37 ..................................... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCA 23145 37 100.0 36 ..................................... TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGC 23072 37 100.0 39 ..................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCA 22996 37 94.6 35 T...C................................ CCTCATGGTGGGACATGGACGAGCGCGACTATCGG 22924 37 97.3 36 .......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGC 22851 37 100.0 39 ..................................... ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCC 22775 37 94.6 37 A..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCG 22701 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 98.7 37 GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGT # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //