Array 1 57090-58140 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904147.1 Porphyromonas macacae DSM 20710 = JCM 13914 strain DSM 20710 A3GIDRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 57090 33 100.0 36 ................................. ACTTAAGGACACGGGCGTTACAGCTATGTTACGCGC 57159 33 100.0 35 ................................. AAAAATCTATCTAAAATCGAAATAGCCTCAGAAAC 57227 33 100.0 34 ................................. CTTCCAAACTCTTCCACGACTTTGTTTGTATCAG 57294 33 100.0 37 ................................. GATTACTTTGCCCCAGGGGCATACATGGGAGAGTTAT 57364 33 100.0 34 ................................. TTACCCATCCTCTGTGCCGGGCACTACGAAAACA 57431 33 100.0 36 ................................. CCTGATGGCGGGGGGTTGTTGCTGCCAGCGATGAAC 57500 33 100.0 35 ................................. AGGTCAATGATGCCGGCACGCAATTTCGCTGGCTG 57568 33 100.0 34 ................................. ATCTTACGTTTGTGCTCGATGACCGTGATGTGCT 57635 33 100.0 34 ................................. ACTTATTCCATCCGTACTTAGATACCCGGCTATG 57702 33 100.0 36 ................................. ATGTGAAATCTTTGTGCCAGAAGAGGCTTCTGGTGT 57771 33 100.0 33 ................................. GATGGTGTCGACTTCGGCGCTGGCCAGTATCGC 57837 33 100.0 35 ................................. AAAATCGCAAAACAAATCGATATCGTCTATATTAA 57905 33 100.0 36 ................................. GCCATTATTCCGTGTCTTTATATAAGTCGAGGATAC 57974 33 100.0 34 ................................. TTGAGTTACACCTCCGCAAACCAGTTTGTCCATT 58041 33 93.9 34 ............................C..T. ACTTCACTGCCTACGATGGAAACGCCATAACGTT 58108 33 93.9 0 ............................C..T. | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.2 35 GTCGCAACCCGTCCGGGTTGCGTGAATTGAAAT # Left flank : TTGATGAGTATCCGGTTTTCTTAATCCAATAAATCATGTATTTACTTATTACTTATGATGTCTGCACCTCAAGTCCTTCAGGAGCTAAACGCCTTCGTCAAGTTGCACGTATCTGTCAAAACTATGGACAACGAGTTCAAAATTCTGTTTTTGAGTGCTTAGTCGATCCCACTCAATTTATCTTAATGAGGCAAGCTCTTCTTAATACTATAGATGAAGAGCTTGATAGTTTACGGATTTATCAACTTGGCAAAAATTATCGTAATCAAATCCTTTTTTACGGTCGAGTTACTTCTTTCGAGTTAGAAGGAGAATTAATTATATAATCGCTCTGCGAACCTCAAGTACACAGTAAAAGCACACCCCTTTCGCATCTCTTCATTACCAGTAGATTAGATCGAATTTGTCAAAATTATAGAAGTGCGTTCTTTGAAATATTTAGATATTCGCATTTTACCTCTCTATATGTCCTATAAATAATATATATTTACATACTTACA # Right flank : TTGCAATTAGATTTTGTAACGAATGTACTTATTTAAAGCAAATTCAAGAAAAGAAAAAGAGATAAGAAGCTATAATTCAACGGAGGAGAATTCGGCAAAAGCCTTTTGAAAGTCTCTTTCGGCTTCCAGAGTTCGGTTAACCGTGTCGTAATACAACCCTATCTCCAGGATATAATCCAAAAGGGAAATGTGCCCGGCATCAAGCGCTTTCTTTAGCAGTTGTGTGCTGTTTACATCCACAAGCGTTCTACGATAGCTCTCGGCTGTATCCTTCAACCCTCGGGCACGTTCATATAAAATTTTAAGCCGGCTGTAATATTGCTGTTTGGTGTCAATTGTCTTCAATTCAGCTGTCCGGACAACTGCTTTTGCCTGTTTGACACGGTTTTTATTCGCCCAAAGAGGAAGCGATATACCCAAAGAAATACCATGGGAACGCTCTCCAGCCTCTTTTTCACTCATATAACCGGCCGAAAACGCAGGTAACCCATTTGCTTTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTCCGGGTTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //