Array 1 16405-14585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMQ010000042.1 Amedibacillus dolichus strain MSK.15.4 OJECDOOJ_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16404 36 100.0 30 .................................... TTGAAGAATTGGAACGTCAAAAAAGATTGT 16338 36 100.0 30 .................................... CATCATTGTATCACTCCTTATCGCGATATA 16272 36 100.0 30 .................................... TTCAATGCCTCCGTAATCATAGTAAATATA 16206 36 100.0 30 .................................... TTGGAAATAAAATATCTACATTGGGTTATT 16140 36 100.0 30 .................................... CTACCGATAAATGGGAGCATGTTATCAGAA 16074 36 100.0 30 .................................... ATAAAAACGATTATAACTAATTGTTTCGTA 16008 36 100.0 30 .................................... CAATTTTCATTGCGATTGCTTCGGCTAACT 15942 36 100.0 30 .................................... CCTGAATATCTTTTTCATTATCAGTATCAA 15876 36 100.0 30 .................................... TGCCAAAACGTTCATAAACATTATCCCGCC 15810 36 100.0 30 .................................... AAGATGGATGTATTTATGATGAAATAACAG 15744 36 100.0 30 .................................... AAAAATTAAAAGCAAAAAGCGATGTAAATT 15678 36 100.0 30 .................................... TCCGCCATAGCGGTTTGGAAATTGGAATTG 15612 36 100.0 30 .................................... CATTCTCTTAATTACGCCTTGGTTCATCAA 15546 36 100.0 30 .................................... ACAGGAATTGAGGCAAATTGTGTTATTGAA 15480 36 100.0 30 .................................... ACAGGAATTGAGGCAAATTGTGTTATTGAA 15414 36 100.0 30 .................................... ATTGCCGCTCCGATGATTGCCCCTAAAGCA 15348 36 100.0 31 .................................... TCTAACGTCTATTTCATCGGCGCGTAATGTT 15281 36 100.0 30 .................................... CGGTAATCTATAACCTCCTGTTCTTCTTAC 15215 36 100.0 30 .................................... GATACCACAAACGTGGATTTGCTACTGCCG 15149 36 100.0 31 .................................... TAACAGCAACCGGAACAGTACCACAAGAGGG 15082 36 97.2 30 .G.................................. ATCACATGGAAATTGAAAGATGAAGAAGTT 15016 36 100.0 30 .................................... CATTACATGATAAAGACTTTAATCCAAATG 14950 36 100.0 30 .................................... TACCGATCGAATCGCTTACGGAATCCATCA 14884 36 100.0 30 .................................... CTACCATTGACGTAAAGCTTGGCGACCTTT 14818 36 100.0 30 .................................... AGCAAATGACAAAACACGTGATGAACGTAT 14752 36 100.0 30 .................................... ATAGAAGCATGGGGATATGTAAAAAAAGCA 14686 36 100.0 30 .................................... CAACTGCATCGATTGCTTGAAATTCTTCAA 14620 36 94.4 0 .................................A.A | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.7 30 GTTTTGTTACCATATGGATTTTTGCTAGATTAAGAC # Left flank : TAGCTGATGATAATGA # Right flank : TGGATATCCAATCATATGAGACACTATGATGGATATTTTTTATGCTTTTACAATAATACAGTGTATTTATTACAACATCTTAAGAATGTAAGACATTGTTAGAGGTTTTTGTTATAATTACGTAGGAGTGAAGTCGATGAAACAAAAGAGAAAGCTTAAGACATCGAAGGCTTTATCTAGTATTGCGATTTTAGAAGGAATTGTGATTGTCAGCATGGTTATTCTTTGTCTTGTCAAAACAGATCTTCCTATTGTAGAAAGTATCTTGCCGGAACAGCTACACGGATCAAAGGAGTATGATGTGGTTTTAGATGCCGGGCATGGAGGTTTCGATAGCGGAGCGATGGATCAAAATTTGATTGAAAAGGATATTACTTTGCAAATGAGTAAGCAAATAGGTAAAATACTTGAACGGCATGGCTATAATGTTGCCTATATACGCGAGGGTAATGCGATCGATTGGGCAACTGATGAACTTTCTGATTTAGCTTATCGTGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGGATTTTTGCTAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 369-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMQ010000002.1 Amedibacillus dolichus strain MSK.15.4 OJECDOOJ_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 368 36 100.0 30 .................................... ACACACTACTTAAAACCGTTGTAGAACGTA 302 36 100.0 30 .................................... GAAAACAAGGCTCTAGCTGATGATAATGAA 236 36 100.0 30 .................................... TTATTTTGCAATTCAAGCATTTCTGTTTCG 170 36 100.0 30 .................................... ACACACTACTTAAAACCGTTGTAGAACGTA 104 36 100.0 30 .................................... GAAAACAAGGCTCTAGCTGATGATAATGAA 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTGTTACCATATGGATTTTTGCTAGATTAAGAC # Left flank : GAATTTGCGGATATGAATGTTAAGCAACTTATCAAATTGATAAATGTGAAATTATTACAAGATGATTTGTATAGTAGTGCTTATAATTTATCTTATGAAGATTATTATTTGTATCAATTAAATGTACTTTTAGCTATTGATGCTTCATTATATGAAAATCAAGTGTTTTGCATTCTTAAATTACATACATTGACAGAAAAATTATATACTAAAATAAGAGAATTCAAGAATATTCGTTTTTTAATATTTTCTGTAAAATGTATTTGTAAAATCAATATTGAGGATATTTATTATATTGGATTGAGAAATGTGGTTGATTTTGGCAATGAGGATCAAATATATGATTTGTTTTCAACAAAAAAGCAAACAATGGAGGAAATAAAAAATATGATAAAAGACTATTTTATAAAACTGAGTAATGGAACAAAAAATGATATTGTAGATTTGATAATGAAATAAATATACCCAAATTCAAATACATATGTTAAAATATGTTTGAG # Right flank : CTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGGATTTTTGCTAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //