Array 1 2219-2007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRO01000103.1 Leptospira weilii strain 56145 Contig103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2218 29 100.0 32 ............................. ATTACAGTACATGAGATACGATCTCCATTTTT 2157 29 100.0 32 ............................. AAGTGGGAAGACTGTTTGAGTTCGGAAGAATC 2096 29 100.0 32 ............................. ATGTTTTTAAGGGCTACATCTATGATCCACCG 2035 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47351-48721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRO01000075.1 Leptospira weilii strain 56145 Contig075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47351 29 100.0 32 ............................. GAAGGTCTGTTGTTCTAACGATTACACCGGCT 47412 29 100.0 32 ............................. CGGTGTAGAATAAGGAATAAATTATTTCCTAA 47473 29 100.0 32 ............................. GCACGACTGACGACGAGCTTGCTCTGTTTATT 47534 29 100.0 32 ............................. ACTATAAAAAAGCCGATAATAGGATATAGCGA 47595 29 100.0 32 ............................. TATAGTGAATACATTCGAGTCATCAAATTTAG 47656 29 100.0 33 ............................. TAAGAGCATCTGGTCCTTGGACTATTAGCTATC 47718 29 100.0 33 ............................. GTTGCCAATTCAACCAGAGCATAACCACTAAAC 47780 29 100.0 32 ............................. GAAGTCGTTTAGAAAATCAAACCTTCACTGGA 47841 29 100.0 32 ............................. ATTTGAAACGTTCCCTTCCGTCCGTTTATGTT 47902 29 100.0 32 ............................. AGACATCGTTTCATGATGTAAGTTAGTTTGTA 47963 29 100.0 32 ............................. TTAACTGAGGAGTTTAGTCTTGAAGATCCTTT 48024 29 100.0 31 ............................. TCTTACCCCACTCTTGTTTGATATCTACAAA 48084 29 100.0 32 ............................. TTTCTCTAAGTTTGATCAACACGTTTGATTTT 48145 29 100.0 32 ............................. CTAGAACTACTGAAATTGCTGAGTTGAAAGAA 48206 29 100.0 32 ............................. AATTTCCTGATTGTCCTGAAGTGGACGTGAGC 48267 29 100.0 32 ............................. GCAAAGGAATTTGAAAAATTTCAGCTGGAGTG 48328 29 100.0 32 ............................. AGATCCAGCTGCGGTTCCCTTTGTGTGGAAAG 48389 29 100.0 32 ............................. GACCAGATCGGAAAAATGGGCGCGCTAAAGAC 48450 29 100.0 32 ............................. GGATTCGGGTTCCGAAAAAACTGTTGGACCGT 48511 29 100.0 32 ............................. AAAAAGAAAGCAACGGTTGAAGCACCTTTTTA 48572 29 100.0 32 ............................. ATTGATCTGCAAATCGAGTATCACATTCTAAA 48633 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 48693 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.1 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : CAGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTTCAGTCAAAACAAATAAAGGCGAAATAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAACTTTCAACGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGAGGTATAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //