Array 1 12625-2794 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAXX01000019.1 Brachyspira aalborgi strain PC5538III-lc PC5538III-lc_contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 12624 31 100.0 37 ............................... ATTGTAAATAATCAGGAAGACGATAAAGTCGTTGTTG 12556 31 100.0 37 ............................... CGTAAGTTTTTGATACTAAAGCGTTATTTAATTTTGA 12488 31 100.0 37 ............................... TCTTTATTTTCTAATTCATTCGGAATTTTAAACTTTA 12420 31 100.0 36 ............................... TATTATTTTTTGATTTTCTTTATAATGTTTATAATA 12353 31 100.0 35 ............................... TCTAATTCTTTAATTTTATTTTCTTTCTCATATAA 12287 31 100.0 36 ............................... GATATATCTAAGTTATAACTATTGGTTGTATTACAA 12220 31 100.0 36 ............................... GATGTATCCGTATGCTTGTCTAAAGTAATCTATTTG 12153 31 100.0 37 ............................... TTTTCATCTCTATCCGCGTATAATTCATCGTATGTTA 12085 31 100.0 36 ............................... TTATCACTTGACACCGGATATTTATTAGGCGCATAT 12018 31 100.0 36 ............................... TTGACGATACTTATTTTAATTTTAAGGAGGTGAGAA 11951 31 100.0 37 ............................... ATTCTCATAGTTTATGGGATATGTTCGGATTTAGTCG 11883 31 100.0 37 ............................... AAATAGATTAGATACTTACAGATTACAATACGCAGAG 11815 31 100.0 36 ............................... TTTAATGCTACATATCATACATAATTTTAAACCCTA 11748 31 100.0 36 ............................... AATAATATATTTTATAATAAGTTGTAATACAACCAA 11681 31 100.0 37 ............................... GTATTAGGAGAACCACTAGCTGTGCCTATATCGGGAA 11613 31 100.0 37 ............................... TGCGAAAGAATTCTCAATATACTTGAAATTAATGTAT 11545 31 100.0 36 ............................... AAAGATAAACAACAAGAAATAATTGATAGTTTAACT 11478 31 100.0 36 ............................... TTTTGACATAAACTCTCCTTAAATCTTTTTTCTTAA 11411 31 100.0 36 ............................... ATAAGCATACTACACCTAAAAAAAATACAATTATAA 11344 31 100.0 36 ............................... TTAACGAATAGATTTGAATTAAATAATCACATTACT 11277 31 100.0 36 ............................... TCTAAAACTCTTTAATTGATAACCTGCATTATCTTT 11210 31 100.0 36 ............................... TCACTATGCTTTATTCTAAAATACATTATTACAATT 11143 31 100.0 36 ............................... GATGCAAATCATTACGAAAATATATGTCTACTCAAA 11076 31 100.0 36 ............................... AAGATATGGTAAAAAAGATTTTAGAATATTTTAATA 11009 31 100.0 36 ............................... AAAGTAGACGAGCCGAAAGCGGATGGTTTAGAAGGA 10942 31 100.0 36 ............................... TAAATACTCTTATATAAATTATAATCTATTTTATTA 10875 31 100.0 37 ............................... GTTATCCTTAAAAGAATATAAAAACTTTCTCCGTCCA 10807 31 100.0 36 ............................... TTTATCGTTTGAAGTCGACTTATAAAATCCACTATA 10740 31 100.0 36 ............................... TACTTGATACTCTTTATTATTTAATCGTATTATATA 10673 31 100.0 36 ............................... CTTTTTAGCGGTTATATTCAATCCGCTTATAATCAA 10606 31 100.0 36 ............................... CTACGAAGGTTAAGAGTATTGAAGGCTTTGCCGTTT 10539 31 100.0 35 ............................... TTCTCCATATAATCAAGGTATATGTTTTTAATTGC 10473 31 100.0 36 ............................... AGTAGAATAGTTCGGTTGAAGGCGGTTAGTTTTCCT 10406 31 100.0 36 ............................... ATATATACATTTTTATTCCTCATCGCTTTTTTTAAA 10339 31 100.0 36 ............................... AAAGTCGACTATTGCCTTGACGGGTTGAATAACATC 10272 31 100.0 36 ............................... ATTTTCTAACTCTTCAAGTTCTCTTAAAGCTATTAA 10205 31 100.0 35 ............................... ATCGTAATTTACTCGCAATAAGTCCTCTCCCGTCC 10139 31 100.0 36 ............................... CAAGCAAAATTATTTTATAGAGTTAAAATATTATGA 10072 31 100.0 36 ............................... TTCTGTCGACTTGTAAATCCAGCCGTTAAATAATCC 10005 31 100.0 36 ............................... AGTCTCTTACCAATTGATTTTTCAAAAAAGAATTTG 9938 31 100.0 36 ............................... AGCGGTATATTAAAATAATCCGAAATCTTTTTTATA 9871 31 100.0 36 ............................... CTCACTGGTCAAGGTAAAGTAAAATGGAATTCCCTA 9804 31 100.0 36 ............................... GAAGTAATAACGATGATTACATCTATAATTGTGGGC 9737 31 100.0 36 ............................... GAAAAAGTCAGTCAAGTCGATTATGTCGATAGAAGC 9670 31 100.0 36 ............................... GGATTAATAGACCATGTTTATGGAGGTTTATGATGG 9603 31 100.0 36 ............................... GCTTTTTCTAACCATATCATATATTGACGAGGAATA 9536 31 100.0 37 ............................... TTCCTCTTAATTTGGAAGGAAGCGTCACATGGGATAA 9468 31 100.0 35 ............................... CTCCTAACATAGCCATTAAATCCTGTTCATTTCCA 9402 31 100.0 36 ............................... ACAAGTCGGCGGACGCCCCCCGCACTTCGCAAGCGA 9335 31 100.0 36 ............................... GTAATTCTTGTATTGTATTTTTACATCTAGAATTTA 9268 31 100.0 36 ............................... CACTCTCCAGAAATGCGAATATTGGAAGAGGAGAAT 9201 31 100.0 36 ............................... GAATATTTTAACTGCGTCAAGTCGTTAGTATATTTT 9134 31 100.0 36 ............................... AAAGCTTATATTTCAAAATTAATAGATAAATATAAA 9067 31 100.0 36 ............................... TAACTTTAAAGAATACTAGAAAGAATTATTATTATA 9000 31 100.0 36 ............................... TTTAAAAATCTTTCGATTTTATTATAGGATTTTTTT 8933 31 100.0 36 ............................... CGAAGGAGCGAAAAAAATGACGATTAAAGAATTAAA 8866 31 100.0 36 ............................... TATAACGAAAGACGATTTAATCGATTATATAAATAA 8799 31 100.0 37 ............................... AAGACAAAGCCGTTGAGAGAATTATAAAAATATGCGA 8731 31 100.0 35 ............................... TTTTATTGGAATTGGCTCTTTTTATTTTACCATTT 8665 31 96.8 35 T.............................. TCCTGCGGCTGCAGGTAATGTTATATATCGACGAG 8599 31 96.8 35 G.............................. GCAATCGCACTCGTTAAAGCCGTTATTACTTCTTG 8533 31 96.8 34 G.............................. ATAGCTAATAATTTATTAAATCCCGCTTTTTGAT 8468 31 93.5 35 GG............................. AAAACTAAAATAGATTATGATTTATGGAGACTCTG 8402 31 96.8 35 G.............................. CCGTCCGTTTTTTACAATATGATAGACTTATTAAA 8336 31 96.8 35 C.............................. TAAATATTCTTATATAAATTATAATCGATTTTATC 8270 31 96.8 35 G.............................. CTTTCTGAAACTAAAAAATCAACTTATGAAAATAT 8204 31 100.0 35 ............................... TCTTCTTTTAATAACGAATTCGGTGCTATGCTCAA 8138 31 100.0 34 ............................... ATGCGCTCGTTCCTTTATAACCTATATTATTATA 8073 31 96.8 36 G.............................. CTACTTGAAAAAGGGAGCGATGCTATAGGAAAGGCA 8006 31 96.8 35 G.............................. TTCGTAAAATGGAGTATAGGATTAGGTAAAGATTG 7940 31 96.8 36 G.............................. TTAACTCCCTATAGACTTTCCTTTTAGCCACTCCCG 7873 31 100.0 36 ............................... AATGTATTTTCATTATAATTATTTTGTAAAGTTTGT 7806 31 100.0 36 ............................... CGATAAATAATAAAACATTGCGTCTATTTTCATTAA 7739 31 100.0 36 ............................... TCGAGAAAAAGATTATTACCTTGATTTTATAGACGA 7672 31 100.0 36 ............................... AATGTATTTTCATTATAATTATTTTGTAAAGTTTGT 7605 31 100.0 37 ............................... CTATTCTTTTACGAATATTATTAAATAAAGCTCCCGT 7537 31 100.0 36 ............................... CCAAAATAAAGAGTAATTATGATTGACTTTTTAATT 7470 31 100.0 36 ............................... GAGCCAGAAAGTATAACAATTGAAAATAATTCTAAA 7403 31 100.0 37 ............................... AAAGCGACTTTTAATCTATTGACAACCTCGCCTTCAA 7335 31 100.0 36 ............................... CTTTACGATTTGACAGATTATTATGTTATGTTATGT 7268 31 100.0 36 ............................... GCGGGAACAGAGTGGAAAACACTTGATAACGGCGAG 7201 31 100.0 37 ............................... ACCAAAATTACTAATGGTAATTTTTGGAAAGAGGATG 7133 31 100.0 36 ............................... AGACAATCTATTTATATTACTTGTTTGTAAATCACG 7066 31 100.0 36 ............................... ATTCCAAATTTCCAATTTACCTTCATGTAATAATTT 6999 31 100.0 36 ............................... CTCGATTTTTTTACCGCTCGGGGCGGCGCTCGGCGA 6932 31 100.0 36 ............................... TAAAGATGGAACTATAGGAAATTCAACTCAAGCTAT 6865 31 100.0 36 ............................... ATAGATGCTAGTATATTTATTTCAAATATAAATAAA 6798 31 100.0 36 ............................... TAAAGTTTCTACATAACCATAATTTCTACCAAACTC 6731 31 100.0 36 ............................... TTTGTCAATAACCTCTCTGCTATCATTGTATCAAAG 6664 31 100.0 36 ............................... TCCATAATTGTTTTTTCTGTTTTTCATTATTAATTA 6597 31 100.0 37 ............................... TAGTTTTTTAATAGCGAAAGATGATAAAAGATTACAA 6529 31 100.0 37 ............................... AAACAAATTCTTAACGGTTGCCGCAAAGCGATAAAAC 6461 31 100.0 36 ............................... GTTTTTCTATCACCATTCTTTATATTTAATATATCG 6394 31 100.0 36 ............................... TTTAGCTAATGCCTCAATTAACGCCTCTTGAAAAAC 6327 31 100.0 37 ............................... ATTGGTTAGACCAATCTATAAGTGGCACTGCGCTTGA 6259 31 100.0 36 ............................... AAAACAAAATGATTAAAGAAGCTATCGATAATAGCG 6192 31 100.0 37 ............................... ATTTATGAAGACAGTAAAGATATTTGTCAAGGCATAG 6124 31 100.0 36 ............................... GCAGTTTAACTATTCGACATATTATTAAAAAATAAA 6057 31 100.0 36 ............................... AGTAGTAGACAATACTATTGAAAGAAGCCAATTCTT 5990 31 100.0 37 ............................... ATTTAATTATCAAAAAGAATTAAATAACCTTCAAATG 5922 31 100.0 36 ............................... TTTAGCTAATGCCTCAATTAACGCCTCTTGAAAAAC 5855 31 100.0 37 ............................... ATTGGTTAGACCAATCTATAAGTGGCACTGCGCTTGA 5787 31 100.0 36 ............................... TTTCGATGTCCATACTGTGACGAGCCTCAAGCTCTT 5720 31 100.0 37 ............................... ATTTATGAAGACAGTAAAGATATTTGTCAAGGCATAG 5652 31 100.0 36 ............................... AAAACAAAATGATTAAAGAAGCTATCGATAATAGCG 5585 31 100.0 37 ............................... ATTTATGAAGACAGTAAAGATATTTGTCAAGGCATAG 5517 31 100.0 36 ............................... GCAGTTTAACTATTCGACATATTATTAAAAAATAAA 5450 31 100.0 36 ............................... AGTAGTAGACAATACTATTGAAAGAAGCCAATTCTT 5383 31 100.0 37 ............................... ATTTAATTATCAAAAAGAATTAAATAACCTTCAAATG 5315 31 100.0 37 ............................... GGCATTAACAATATTGAGTATATCGGATATATTAAGC 5247 31 100.0 37 ............................... TTCTCTTTCTTTCTCTTTATGCCCGAACTTTTTATTA 5179 31 100.0 38 ............................... CCTACCACGACAGTTAGTAGGGGGGCGGTTTGCGATAG 5110 31 100.0 37 ............................... GGAACTCTTTGGGATTTCCTAGAAAATCCAATTAATT 5042 31 100.0 36 ............................... TTTTAATACTCTCCTAATTTCCAGTTTATAAATTGC 4975 31 100.0 36 ............................... AAATTAGATTATATTCATGCGGACGATTATATTCGC 4908 31 100.0 36 ............................... GATTTGAGCTACACGGCAATCAATTAAAAATTATAG 4841 31 100.0 38 ............................... CTTTAATTACAGAGTTAAAGCGGACTTTAGAATTAAAA 4772 31 100.0 36 ............................... AAAGAAAAAGATAAACTACATATTGAATATATTGAA 4705 31 100.0 37 ............................... CAAGTTTCACTTTATTAAACGCTCAAACGGGCGGGCT 4637 31 100.0 37 ............................... CATAAATCGGAGCTACATCCTACAATGAAGCCGATTG 4569 31 100.0 36 ............................... ATTTACGAAGACAGTAAAGATATTTGTCAAGGCATA 4502 31 100.0 36 ............................... CGACAAACTATAAAGGAACTCTTACGCAATTAAAAG 4435 31 100.0 36 ............................... TGCGTTTCGTTTGCCCAATTTCTATAATCAGCGAGT 4368 31 100.0 36 ............................... GCAAAATTAAAATTATGGGTTGAGATTTATTATAAA 4301 31 100.0 37 ............................... AGCGTTGATATTCAAAAAGATGTAAGCGCTATGGCTA 4233 31 100.0 36 ............................... CTTTTTATCTCCTCTACTTTTTTATTTATTTCTTCT 4166 31 100.0 36 ............................... CGTTGAAAGTCAAAAGATTTCTTGTATAGTCATAAT 4099 31 100.0 36 ............................... CTTGTCGAACAGACAAGCAAGATTTACAAACTATAC 4032 31 100.0 36 ............................... CTTCGCATTTCGTAATCAGTTTTTGTTTTAACATAA 3965 31 100.0 36 ............................... GCGTCTGTAATTTTTTTTGTTTCGTTTTCAGCGCTT 3898 31 100.0 36 ............................... ATTTTTTCAGATTTAAACAAAGCCTCAAGCGAAGAA 3831 31 100.0 36 ............................... ATTTTTTCAGATTTAAACAAAGCCTCAAGCGAAGAA 3764 31 100.0 36 ............................... TACAAATTTGCATTGACTTTTCTCAAAACAAAAAGT 3697 31 100.0 36 ............................... ATTATTCCGTCCGCTTTTATTTTGCAAGCTTCTTGT 3630 31 100.0 36 ............................... GCTCGTCCTTTTTCTACATTTATAAAAAGTATAAAC 3563 31 100.0 37 ............................... GCAAGTCCGCTTGATTTCATCATAGCGCCGAGCGTTG 3495 31 100.0 36 ............................... ACTGCAGAATATAAAGCTGAAATATGATAAGAGACG 3428 31 100.0 36 ............................... CGTAAACTAATATTAGATAGAACGGGAGAAAAATTA 3361 31 100.0 37 ............................... TTTGTTATTTTATATAGCTTTGCTATATGATTATTGC 3293 31 100.0 36 ............................... AAAGATAAAGCAAGCTTTATTATAAGAGGAGCGCAA 3226 31 100.0 37 ............................... AGGGAACGCAGGAGGAAAAGCTCCTGAAATAGATATG 3158 31 100.0 36 ............................... GACAAAAATCTATATATATCTTTATCTAAATTTCTT 3091 31 100.0 36 ............................... ACTAATTTATATTCAACACTATACTGGAGTTATAGA 3024 31 100.0 36 ............................... AATAAAAGATTGATATTAGATAAGATTTTATTATTA 2957 31 100.0 37 ............................... ATATTTTTTATTATAGTCTTTTTTGAATTATTTGATT 2889 31 100.0 35 ............................... TGTAATATTAGAAGAGATAGAATTTTTATTTGAGA 2823 30 87.1 0 ...................A..T..A-.... | ========== ====== ====== ====== =============================== ====================================== ================== 147 31 99.7 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTACTCGGAGAAAAAGAATATTCTCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAGGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTGTTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTGAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTAAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TATTATTTATTATCTTTATTTTGGAAACAAGACATTATTGTAATAACCATCCATAATACAGGTAATACTATCAATAAAATTATAATAAATGTTATAATATCAAAAATCGATATAATCACTATTGATAATGTAGCTATTACAATATAAGGAATAATAGAAAAAGCCGAAATGTCTGCATTGGTATTTTTTAATTTTGTTTTATCAATTACCCAACTTTGTTTTTGACGCTTTGGCTTTTGTTGGCGTCTGCCCTTACAGGAAGCTTTAGCTTGAGCATGTTGCGTAAGATTATAACAATGATGAATATTATTGTATGATTGCCAGCTTTTCTTTTCCATAATTATATTATAATACATCTTCGGCTTTTTGTCAATACTTTTGTATTAGATTATTATAACTAAAATATTTAATATTATAAATAAAGAACGAGTTAATATACGTCAAATAAGAATAGTATTGATATTGAATTAAATTTTAGTGGTGGGCAAAGAACCAAAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //