Array 1 80763-79605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015398.1 Levilactobacillus brevis strain NPS-QW-145 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 80762 36 100.0 30 .................................... CACCGAAAGAGGTATTGGACTATAAGGCTA 80696 36 100.0 30 .................................... AAAATGAGTTCTAGTAATCCAGTAACTGCC 80630 36 100.0 30 .................................... AACATCAAAGATAAATGCTGGTGCAAGTTT 80564 36 100.0 30 .................................... TCCGGACTGATCGCCACTTGATGGGAACAG 80498 36 100.0 30 .................................... TCTAATTCAGCTTGAGTGAATTCATGACCC 80432 36 100.0 31 .................................... CGGCGCATTGCCACGACTCCCTGCTCACCTC 80365 36 100.0 30 .................................... TGTACGAATACCAGGTAGTTCGCCGGCAGA 80299 36 100.0 30 .................................... GTAAAAATGGCAGATACGAGTTCTTTAACT 80233 36 100.0 30 .................................... GCGTCGTCGGCAACAAACTTACCCGCCGTC 80167 36 100.0 30 .................................... TGTTCCTGGATCGAAATTCCTTGCTTTTTA 80101 36 94.4 30 .......................C...........T TCATTCGTTGAAGTTCGATCGCAATCGCCT 80035 36 100.0 30 .................................... GAAAAGATGGTCAGGGACTAGAGATTAAAG 79969 36 100.0 30 .................................... ACCGCTGTGGTAAAAGCTGTGAGGGGTGGT 79903 36 100.0 30 .................................... GGCAACACGATTCGATTGATCCTGACACGG 79837 36 97.2 30 .........................T.......... ATCACAATCTTTGGTGAAACGTCGTAGTCG 79771 36 100.0 29 .................................... TGGACTCTATGAATAAGGAACTGACGTAT 79706 36 97.2 30 .........................T.......... TCAATTCTCAAGGACGATCAGCAACGCGTT 79640 36 94.4 0 ...........................A.C...... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.1 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCATTATTTCAACGAAAACTGCAAATAAGGTTGTTAAAAGTCTTAGCTGATGAACAAACGGTGGGCTTAGTGGATGGACTGCAATCATTGCTATCTCAACTATTAGAGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTGGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGACGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATCTACCAATCCTTCTAATTGAATTTTCATCAACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATATCG # Right flank : ACCCACTAGCAATGATGCTGGGTGCTATGCTGTCTTACGATCTTGAAAAAGCGCTCATTGATAAAGAGCGAAATAACTTCTTTGGAGATATTAATGGCCTTATAAGAAACGGTCTATAGGTTTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCTCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCATGTATCCCCAAGTTAACATACAAAAATATGTATCATCTCAATTCAATCAACCAGCGTTTAGCAACCGCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGCCAACCGCACCGCGTATGATAGAGAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1416352-1416624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015398.1 Levilactobacillus brevis strain NPS-QW-145 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1416352 29 96.6 32 ............................C GGGTGACTTGGTTCGGGATCTATGCCAGTTCG 1416413 29 100.0 32 ............................. TGCATGGGTTCTGGTTCAACGGGCGTGAGTTG 1416474 29 100.0 32 ............................. TAATGGATAAAGTCAAAGCTGCTGAAAGCGAG 1416535 29 93.1 32 ..........................T.C GGCCAATGATGTTGAATTGCGCTCGGGTGTTA 1416596 29 69.0 0 ..T........AT.....T...CAC.A.C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTATTCCCCACGGGTGTGGGGGTGATCCT # Left flank : CGTACCCGGCCGTGTTCCATGATAATGAAGCTGGTGGGTATATCGTAACTTTCCCCGATATTGAAGAAGCTATGACCAGCGGCCAAACCCTAGGCGAGAGCCTGGTCAACGCGACAACCGTTCTCGGTCAGACGCTCCATCATCATCCGATGGTACTGCCAACAGCGACGACCATCACTGAGTTGATGCATCAATACCCCATGGCATTCATTCAGTTTGTCGCGGTAGATTTAGACCAAGTCATCGAACACGCAGTACCAACTGATCAAGCAGACCTACAATTGACTTAGTCATTGATGAAATAAAGCATAAAAAGCCGGTCCCGGTTAAAGGGATCGGCTTTTTATTATGTATGAGAGTGAGTTGTCGGATAACGAACCGGATTGCTGTCGCTACGATTCTGCGGTATGCTATAAAATATAGATGAGTCTCATGACGAAACTCATAAAAAACGCCGGTTTTTAAATTTTAAAATTCCGGTGTGGCGGCGTTTCTTTAGT # Right flank : CAGTAGTTGTTCTCTTCTAATTGCCGAATATAATAAAATAACAGCGTACCTCAATCATGGGTACGCTGTTATTTTTAGTTTACTCAGCAAGACGAATGCGAATATCGCCAATCTTTTGTTTTAGATGGTTAATGGATCGGGTTAGTGTTGTGCGTTGTTCTTCCGATGCGCTTAACTGGGCTTGGAGAATGGCCAAGCGTTCCCGCAGTGTACTATCACCTTGTTCGTAGGTAGCGATGAACTGCTTCATTTGCTTGATCGTCATTCCACATTGTTTGACGCAGAGAATGAAGTCCATTCTTTCCAAATCAGTAGTGTTGAAGTCCCGGATACCGTTGATGCGGTTAATGGGGCCGATAAGTCCCTGTTGTTCGTAGTAACGAATGGCCGATGTTGAGATGTGGTAACGCTGAGCCACAGTTTCGATTTTCAAAAATGATCACCTTCTTGACTTAAAGTATACTTTAAGTGGTAAGGTTTTCAACAACGGGTAAATCAGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //